| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_0391 |
|---|
| Symbol | |
|---|
| ID | 4030200 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrobacter hamburgensis X14 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007964 |
|---|
| Strand | - |
|---|
| Start bp | 433367 |
|---|
| End bp | 434827 |
|---|
| Gene Length | 1461 bp |
|---|
| Protein Length | 486 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637968920 |
|---|
| Product | type II and III secretion system protein |
|---|
| Protein accession | YP_575742 |
|---|
| Protein GI | 92116013 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4964] Flp pilus assembly protein, secretin CpaC |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.796113 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGTGGA CGATAAATCC GACACCGCTG CAGGCCATTG TGGCGCGGTC TCTCTCGTTC
GCAGCAATCG CCGCCTTCAC GCTGAACCCG GCGCTGACGC CGGTGTTCGC GAGCGATTAC
CGCGTGCCAG CCGCAACGGC CGGCGCAAAG ATGCACGCGC AATCGCTGTC GCTCGGCATC
GGCAAGTCCG TCGTGGTGGA CTTGCCCCGT GACGTCAAGG ACGTCCTGGT CGCCGACCCG
AAGATCGCAA ATGCCGTGGT GAGGTCAGCG CAGCGCGCCT ACATCATCGG CGCAGCGGTC
GGTCAAACCA ACATCATATT CTTCGACGGC AGCGGCCAGC AGATTTCGGC TTATGACATC
GCAGTCACGC GCGACCTCAA CGGCTTGCGC GCCGCGCTCA AACAGATCTT GCCGAATGCG
GATATCAAGA TCGACGGCCT CGGCGACGGC GTCGTACTTT CGGGTTGGGC CCAGAGCCCG
GTGGAATCCC AGCAAGCGGC CGATCTGGCT GCACGCCTCG CGGGCGGTGC CGACAAGGTG
GTCAACAGCA TAGCGGTTCG CGGCCGCGAC CAGGTCATGC TGAAGGTGGT GGTCGCGGAG
GTGCAACGCG ACATCATCAA GCAACTCGGC GTCGATTTGA GCGCCAACCT GAGCTATGGC
ACCGCCGTCG TGAACTTCAA CAATTCGAAT CCGTTCCTGG CGACCGGATC GGCGCTGGTG
CCGGGCAACA GCGTGGTGGG CGGCTTCGGC AAAAGCATCA TCAACGGCGT GACGATGCCG
ACCGTTCAGG CGACGCTGCG CGCGATGGAA AACTCAGGCG TCATCCGCAC GCTCGCCGAG
CCCAGCCTGA CCGCGATCTC CGGCGAATCG GCGAACTTTC TCGCTGGCGG CGAATTCCCG
ATTCCGTCGG GCGTTAGTTG TACCAACGGA ACGTGTACGC CGACCGTCAC TTTCAAGAAG
TTCGGTATTT CGCTGAATTT CACGCCGGTG GTGCTGAGCG AGGGCCGTAT CAGCCTGCGC
GTCGCCACCG AAGCGTCCGA AGTCAACAAC GAAAACGCCA TCCAGATCTC GGGCACCGCG
GTGCCGTCGA TCAAGACGCG GCGCGCCGAT ACCACGCTCG AGATTCCATC CGGCGGCTCG
ATGGTCATGG CCGGTCTTAT CAAGCAGCAA ACCAAGCAGT CGATCAGCGG CATGCCGGGC
GTATCCCAGA TTCCGGTGCT AGGAACGTTG TTCCGCAGCC GCGACTACGT CAACAACAAC
ACCGAGCTGA TGATTCTGGT GACGCCTTAC GTCGTGCGCG CCGTCGCACA GAAGGATCTG
TCGCGGCCCG ATGACGGATT CGCGGATGCA TCGGACCCGC AGGCCGACCT GCTGGGCAGC
ATCAATCGCA TCTACGGCGT TCCGGGTCGC GCCGAACCCG CGCGCCAATA TCGCGGGACC
TATGGCTTCA TCACCGACTG A
|
|---|
| Protein sequence | MTWTINPTPL QAIVARSLSF AAIAAFTLNP ALTPVFASDY RVPAATAGAK MHAQSLSLGI
GKSVVVDLPR DVKDVLVADP KIANAVVRSA QRAYIIGAAV GQTNIIFFDG SGQQISAYDI
AVTRDLNGLR AALKQILPNA DIKIDGLGDG VVLSGWAQSP VESQQAADLA ARLAGGADKV
VNSIAVRGRD QVMLKVVVAE VQRDIIKQLG VDLSANLSYG TAVVNFNNSN PFLATGSALV
PGNSVVGGFG KSIINGVTMP TVQATLRAME NSGVIRTLAE PSLTAISGES ANFLAGGEFP
IPSGVSCTNG TCTPTVTFKK FGISLNFTPV VLSEGRISLR VATEASEVNN ENAIQISGTA
VPSIKTRRAD TTLEIPSGGS MVMAGLIKQQ TKQSISGMPG VSQIPVLGTL FRSRDYVNNN
TELMILVTPY VVRAVAQKDL SRPDDGFADA SDPQADLLGS INRIYGVPGR AEPARQYRGT
YGFITD
|
|---|
| |