| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_0177 |
|---|
| Symbol | |
|---|
| ID | 4030770 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrobacter hamburgensis X14 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007964 |
|---|
| Strand | - |
|---|
| Start bp | 197904 |
|---|
| End bp | 198590 |
|---|
| Gene Length | 687 bp |
|---|
| Protein Length | 228 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637968712 |
|---|
| Product | OstA-like protein |
|---|
| Protein accession | YP_575538 |
|---|
| Protein GI | 92115809 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1934] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | [TIGR03002] lipopolysaccharide transport periplasmic protein LptA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.0249318 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATCCGG CCACGCAGAG TCCCCGCCAT CTCCCGCTGG CGACCCGCAT CGCCGGCCTG
CTGTGCGGTG GATTGATCAC CATCGCCGTG ATGGCGGCCG GCGAAGCCGC CGGGCAAAGC
GCGGTGCAGG GCGTCCCCAA CGCGATGCAG GGCTTTTCCC AAAATCGCGA TCAGCCGATC
CAGATCGAGG CCGCCGCGCT GGAGATGCGC GACAAGAAAA AGGAGGCGAC GTTCTCCGGA
AACGTCAAGG TGGTGCAGGG CGACACCACC ATGACGTCGA AGACTCTCGT GGTCTATTAC
GAAAGCGGCA ATTCGGCCAA TGCCAAGGGC AAGTCACCGT CGAAACCAGC GATGGCCTCG
GCGACGCCGG GACCATCGGG CGCATCCTCG ATCAAGCGGC TGGAGGCCAG GGGCAACGTG
GTGGTGACCC AGAAGGATCA GGTCGTGACC GGCGATACCG CCCAGTTCGA CACCAGGACC
AATCTGGTCA CCATGCTCGG CAAGGTCGTG CTGACCCAGG GCAAGAACGT GTTGCGCGGC
GACAGGCTGA TCGTGGACAT GACCACGGGC GTGTCCCGCG TCGAATCGAA CAGCGGGCGG
GTGCAGGGCC TGTTTCAGTC GTCCGGACAG GGAGGGCCGC TGTCTGGACC GATGCCCCTC
TCCGGTTCAT CGCAAAAGCC TAAATGA
|
|---|
| Protein sequence | MNPATQSPRH LPLATRIAGL LCGGLITIAV MAAGEAAGQS AVQGVPNAMQ GFSQNRDQPI
QIEAAALEMR DKKKEATFSG NVKVVQGDTT MTSKTLVVYY ESGNSANAKG KSPSKPAMAS
ATPGPSGASS IKRLEARGNV VVTQKDQVVT GDTAQFDTRT NLVTMLGKVV LTQGKNVLRG
DRLIVDMTTG VSRVESNSGR VQGLFQSSGQ GGPLSGPMPL SGSSQKPK
|
|---|
| |