Gene Nham_0171 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNham_0171 
Symbol 
ID4029328 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNitrobacter hamburgensis X14 
KingdomBacteria 
Replicon accessionNC_007964 
Strand- 
Start bp192484 
End bp192945 
Gene Length462 bp 
Protein Length153 aa 
Translation table11 
GC content63% 
IMG OID637968706 
ProductPTS IIA-like nitrogen-regulatory protein PtsN 
Protein accessionYP_575532 
Protein GI92115803 
COG category[G] Carbohydrate transport and metabolism
[T] Signal transduction mechanisms 
COG ID[COG1762] Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) 
TIGRFAM ID[TIGR00848] PTS system, fructose subfamily, IIA component
[TIGR01419] PTS IIA-like nitrogen-regulatory protein PtsN 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.125135 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATGATTA CTGATCTGGT CGCACCCGAG GCGATCCTTC CTGCATTGAA GGTCAACAGC 
AAGAAGCAGG CGCTGCAGGA ACTGGCTGCG CGCGCCGCTG AATTGACCGG GCAGAACGAC 
CGCGCGATTT TCGAGGTGCT GTTGCGGCGC GAGAAGCTCG GAACCACGGC TGTCGGCTAC 
GGCGTCGCGA TTCCACACGG CAAGCTGCAA AAACTCGACA AGATATTCGG CCTGTTCGCA 
CGGCTCGACC GCCCGATCGA TTTCGAGGCG ATGGATGGCC AGCCGGTCGA TCTGATTTTC 
CTGCTGCTGG CACCCGAGGG CGCCGGCGCG GATCACCTGA AGGCGCTGGC GCGAATCGCG 
CGGCTGCTGC GCGATCAGGA TATTGCCAAC AAACTGCGCG CCTCGCGCGA TGCGCAGGCG 
ATCTACTCGG TGCTGGCGCT GCCGCCGGCG ACAGTCCCCT GA
 
Protein sequence
MMITDLVAPE AILPALKVNS KKQALQELAA RAAELTGQND RAIFEVLLRR EKLGTTAVGY 
GVAIPHGKLQ KLDKIFGLFA RLDRPIDFEA MDGQPVDLIF LLLAPEGAGA DHLKALARIA 
RLLRDQDIAN KLRASRDAQA IYSVLALPPA TVP