Gene Nham_0129 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNham_0129 
Symbol 
ID4029571 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNitrobacter hamburgensis X14 
KingdomBacteria 
Replicon accessionNC_007964 
Strand
Start bp145259 
End bp147517 
Gene Length2259 bp 
Protein Length752 aa 
Translation table11 
GC content63% 
IMG OID637968663 
Productmulti-sensor hybrid histidine kinase 
Protein accessionYP_575490 
Protein GI92115761 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG0642] Signal transduction histidine kinase
[COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATGGCGC GATTGTTCTG GATCAGGGCC CGTCTGCGCC GATTGATCCG ACGACATCCC 
CGGCTGCATC TAGCTTTTCG GACCGTCACG ACTTTCTCGA TCGCGTTCGG GGGCGCCTAC
GGCTTCGTTT CCGGAAGCAG AAGTGCCGAT TACGACCCGA ACGCCTTTGC AATCGGCGTG
AGCTTCCTGT TCGCGCTGGC GTGTGTCGCG TTAGCGATCC TGAGCATGCG CTTGCGCTGG
ATGCGCAGAA AGCTTCGCAA GATCTCCCTT CACAATGAAA CGCTCGCGGA CCGGAATTGG
GAGTTGAAGG AAGCGGAGGA ACGAGCACGT AGCCTCTTCG AATCGCAAGA CGATCTGATC
GTTCTGCGCA ACGCGGACGG TCTTATCACC TCGGTCAACG ACGCATATTG TGTTCTGGCT
CAGCGATCGC GGGCGGATTT GCTCGGCAGC CGGTTCGCGC TCCCCGTTCT TGAGCAGGGT
GAGAGCGCGA TTGAATCGAA CGGCACGCGC ATCCACGATC AACGCGTCGA AACCGCGCTC
GGTCCGCGCT GGATTGCGTG GCGCGAAGGC CTCGTGCGGA TCGACGCCAA CCATCCGGCG
GAACTGCAAT GCGTCGGCCG CGATGTCACC AACCGAACCG AGACCGAGTA CGCGCTCGGT
GAAGCACGAG ATCACGCGAA CGCGGCCAAC CGGGCCAAAT CGCGCTTCCT GGCGATGACC
TCGCACGAGA TTCGTACGCC GCTGAACGGC ATTATCGGCA TGAGCGGATT GTTGCTCGAC
ACCTCGCTCA CACCCGAACA GACGACATAC GTCAAGGCGG TCAAGGCGTC CGGCGACGCA
CTGCTGTCGC TGATCGAGGA ATTGCTCGAC TATTCCAGGA TCGAAGCCGG CAAGATCGAC
CTTGAAAGCC GTCCTTTCAT CCTGTCCGAC CTGATCGAGG ACATTACCGA ACTGCTGGCG
CCGCGTGCGC AGGCGCGGCA ACTCGAAATC GCCGCCTATA TCGACGAGCA GTTGCCGATC
GAGGTGATCG GAGACGCCAC ACGATTGCGC CAGATCCTGC TCAATCTTGC GGGAAATGCC
ATCAAGTTTA CGCCGTCCGG CGGCGTCGCG CTGATCGTCG AGCCCGGTAC CGAGCCGGGA
ACCATCCGTT TCATGGTTCA GGACACTGGC ATCGGCATTA CGCCGGACGC GCAGGCGCGG
GTTTTCCGTG AGTTCGAACA AGCCGACGAA CAAATAGCGC GCAACTACGG CGGAACGGGA
TTGGGATTGA GTATCAGCGA TCGCATCGTC AAGCGGATGG GCGGACGCAT CACGCTCGAG
AGCAAACCGG GTGCCGGTTC GACATTCGAG GTGTCGATAC CCCTCCCCGC TCACGACAGC
CCACCTGAGC GAAAGCGCTT CTCCACGCCG GATCTGACAG GACACCCGAT CATGCTGGTG
GCCCCCCAAA CCATCGAGGC GTCGCTGCTT GCCCGGCGGC TGGAGCGATG GGGCGCCGAG
ACCTGCACGA TATCGGACAT CGCTGTTGCC CACGCCCTGC TTCCGGGGCG GCCGTGGCAC
ACCGTGCTCG TCGATCATGC CATGGGCGCG GAGGATGTCT GGCGGCTCGG TCAGACCGCA
TGCCGGCACG CGGCGCGGCG GATCGTCATG GTCACGCCGT CGACTCGGCA TGACCTTCAG
ACCCCCGGCG CGGGGGCGTT TACCGGCTAC CTGGTCAAGC CTCTGCGAAC CGCGTCGATC
GCGGCGCGAT TGGCGGCGAC GGCCGACGGC CCGACCGCGC TCCGGGCAAC CGAAGGCCGG
CATGATTGCA ATACTCTCGA AGAGTCCGAG GCGCCGACCA CGGCGCCCAC GCAAAGCCTT
TCGATCCTCG TGGCGGAGGA CAATGAGATC AACGCGTTAT TGATACGCTC GCTCCTGACC
CGCCTTGGAC ACGACGTGAT CCTCGCCGCA AACGGCGAGA AAGCACTTGA ATCATGGGTC
GCCGCCGGAA CAGCGGGTGC GCCCTACGAT CTCGTTTTGA TGGACGTGCA GATGCCTAAA
CTCGACGGCG TCGAGACCAC CAAGAGAATT CGCGAACGGG AAGCCGGCCA GCGCGGCAGC
CGCACGACCA TTCTGGCGCT GACGGCCAAC GCGCTGCTTG ACGATCGTTC TGCCTGCTTC
GAGGCCGGCA TGGATGGCTT TCTCGTTAAA CCGCTCGATC GGGACAAACT GGCCGACGCG
CTTGCGGGAT TGATGGCGGC CCGTCACATC CCGGCCTGA
 
Protein sequence
MMARLFWIRA RLRRLIRRHP RLHLAFRTVT TFSIAFGGAY GFVSGSRSAD YDPNAFAIGV 
SFLFALACVA LAILSMRLRW MRRKLRKISL HNETLADRNW ELKEAEERAR SLFESQDDLI
VLRNADGLIT SVNDAYCVLA QRSRADLLGS RFALPVLEQG ESAIESNGTR IHDQRVETAL
GPRWIAWREG LVRIDANHPA ELQCVGRDVT NRTETEYALG EARDHANAAN RAKSRFLAMT
SHEIRTPLNG IIGMSGLLLD TSLTPEQTTY VKAVKASGDA LLSLIEELLD YSRIEAGKID
LESRPFILSD LIEDITELLA PRAQARQLEI AAYIDEQLPI EVIGDATRLR QILLNLAGNA
IKFTPSGGVA LIVEPGTEPG TIRFMVQDTG IGITPDAQAR VFREFEQADE QIARNYGGTG
LGLSISDRIV KRMGGRITLE SKPGAGSTFE VSIPLPAHDS PPERKRFSTP DLTGHPIMLV
APQTIEASLL ARRLERWGAE TCTISDIAVA HALLPGRPWH TVLVDHAMGA EDVWRLGQTA
CRHAARRIVM VTPSTRHDLQ TPGAGAFTGY LVKPLRTASI AARLAATADG PTALRATEGR
HDCNTLEESE APTTAPTQSL SILVAEDNEI NALLIRSLLT RLGHDVILAA NGEKALESWV
AAGTAGAPYD LVLMDVQMPK LDGVETTKRI REREAGQRGS RTTILALTAN ALLDDRSACF
EAGMDGFLVK PLDRDKLADA LAGLMAARHI PA