Gene Nham_0108 details

Gene Information

• Locus tag: Nham_0108
• Symbol: rho
• ID: 4029609
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Nitrobacter hamburgensis X14
• Kingdom: Bacteria
• Replicon accession: NC_007964
• Strand: -
• Start bp: 126334
• End bp: 127599
• Gene Length: 1266 bp
• Protein Length: 421 aa
• Translation table: 11
• GC content: 60%
• IMG OID: 637968642
• Product: transcription termination factor Rho
• Protein accession: YP_575469
• Protein GI: 92115740
• COG category: [K] Transcription
• COG ID: [COG1158] Transcription termination factor
• TIGRFAM ID: [TIGR00767] transcription termination factor Rho

Plasmid Coverage information

• Num covering plasmid clones: 14
• Plasmid unclonability p-value: 0.411018
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCGGGAAA TGAAACTTCA AGACCTCAAG GCCAAGACGC CAGCCGAACT CGTCTCGTTT 
GCGGAAGAGC TTGGGGTCGA AAATGCCAGC ACCATGCGCA AGCAGGAGCT GATGTTTGCC 
ATTCTCAAGC AGCTCGCCAT CCAGGAAATC GATATCATCG GCGAAGGCGT CGTCGAGGTT 
CTCTCCGACG GCTTCGGATT CCTGCGCTCG CCGGACGCCA ACTATCTGCC GGGTCCGGAC 
GATATCTACG TTTCGCCATC GCAGATTCGC CGCTTCGGCC TACGAACCGG AGATACCATC 
GAAGGTCACA TTCGCAGCCC CAAGGAAGGC GAGCGTTACT TCGCGCTGTT GAAGGTCAAC 
ACACTCAATT TCGAGGACCC CGAGAAGTCC AAGCACAAGG TCAATTTCGA CAACCTGACG 
CCGCTGTTCC CCGATCAGCG GTTCCGGCTC GAGCTGGAGG ACTCGACACG CAAGGATCTG 
TCGGCGCGCG TCATCGATAT CGTTGCTCCA ATCGGCAAGG GCCAGCGTGC GCTGATCGTG 
GCGCCGCCGC GCACCGGCAA GACCGTGCTG ATGCAGAATA TCGCGCACTC CATCACGGCC 
AATCATCCGG AGTGTTATCT GATCGTACTT CTGATCGACG AACGCCCGGA GGAAGTCACC 
GACATGCAGC GCTCGGTGAA GGGCGAGGTC GTGTCCTCGA CTTTCGACGA GCCGGCCGTG 
CGCCATGTTC AGGTCGCCGA GATGGTGATC GAAAAGGCCA AGCGCCTGGT CGAGCACGGT 
CGCGACGTCG TTATCCTGCT GGATTCGATC ACGCGTCTGG GCCGCGCTTA CAACACCGTG 
GTGCCGTCCT CCGGCAAGGT GCTGACCGGC GGCGTCGATG CCAACGCCTT GCAGCGGCCG 
AAGCGTTTCT TCGGTGCCGC GCGCAATATC GAGGAAGGCG GGTCGCTGAC CATCATCGCC 
ACCGCGCTGG TCGATACCGG CAGCCGCATG GACGAAGTGA TCTTCGAAGA GTTCAAGGGC 
ACCGGCAATT CCGAGCTCAT CCTCGACCGC AAGGTCTCCG ACAAGCGCAC CTTCCCGGCG 
ATCGACATCT CGCGCTCGGG CACGCGCAAG GAAGAGCTCA TCACCGATCC GCAACTGCTC 
AAGAAGATGT ACGTGCTGCG CCGGATTCTC AATCCGATGG GCACGATGGA TGCCATCGAC 
TTCCTGCTCG ACAAATTGCG CAACACCAAG AACAACGCGG AATTCTTCGA GTCGATGAAC 
ACCTGA 

 

Protein sequence

MREMKLQDLK AKTPAELVSF AEELGVENAS TMRKQELMFA ILKQLAIQEI DIIGEGVVEV 
LSDGFGFLRS PDANYLPGPD DIYVSPSQIR RFGLRTGDTI EGHIRSPKEG ERYFALLKVN 
TLNFEDPEKS KHKVNFDNLT PLFPDQRFRL ELEDSTRKDL SARVIDIVAP IGKGQRALIV 
APPRTGKTVL MQNIAHSITA NHPECYLIVL LIDERPEEVT DMQRSVKGEV VSSTFDEPAV 
RHVQVAEMVI EKAKRLVEHG RDVVILLDSI TRLGRAYNTV VPSSGKVLTG GVDANALQRP 
KRFFGAARNI EEGGSLTIIA TALVDTGSRM DEVIFEEFKG TGNSELILDR KVSDKRTFPA 
IDISRSGTRK EELITDPQLL KKMYVLRRIL NPMGTMDAID FLLDKLRNTK NNAEFFESMN 
T