Gene Nham_0100 details

Gene Information

• Locus tag: Nham_0100
• Symbol: holA
• ID: 4029601
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Nitrobacter hamburgensis X14
• Kingdom: Bacteria
• Replicon accession: NC_007964
• Strand: +
• Start bp: 115805
• End bp: 116833
• Gene Length: 1029 bp
• Protein Length: 342 aa
• Translation table: 11
• GC content: 68%
• IMG OID: 637968634
• Product: DNA polymerase III subunit delta
• Protein accession: YP_575461
• Protein GI: 92115732
• COG category: [L] Replication, recombination and repair
• COG ID: [COG1466] DNA polymerase III, delta subunit
• TIGRFAM ID: [TIGR01128] DNA polymerase III, delta subunit

Plasmid Coverage information

• Num covering plasmid clones: 16
• Plasmid unclonability p-value: 0.427702
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGTCGCGC TGCGCGGAAA AGACGTCGAC AGCTTTCTCG CCCGGCCCGA TCCCGGACGC 
CCGATCATCC TGCTTTACGG CCCCGATGCC GGCCTGGTGC GCGAGCGCGC CGACGCCCTG 
ATGGCCTCGG CCGTCGACGA TCCCAGCGAT CCGTTTTCGC TGGTGCGGCT CGACGGCGAC 
GATCTCGCTA CTGAGCCGTC GCGTCTTGTC GATGAGGCGA TGACGGTGCC GCTGTTCGGC 
GGCCGCCGCG CCATTCGCGT CAAGGCCGGC ACGCGCAATT TTGCTGGCGG TATCGAAACG 
CTGGCGGACT CCGCGATCCA GGATTGCCGG ATCGTGATCG AGGCCGGCGA GCTGCGGCCC 
GAAGCGCCGC TGCGCAAGGC CTGCGAGCGC GCGAAGAACG CGGTGGCGAT CGCCTGCTAT 
CCCGACACCG AACGCGATCT GGCGCGGTTG ATCGACGACG AGTTGCGGCT CTCGAACCTG 
AAGATCGCAC CCGACGCCCG CGCCACGCTG ATGTCTTTGC TCGGCGGCGA CCGTCAGGCC 
TCGCGCAACG AACTGCGCAA GATCGCGCTT TATGCTCATG GACAGCGCGA GATCGCACTG 
GACGACGTGA TGGCTGTCGT CTCCGACGCA TCCGACTTCA AGCTCGATCC CATCGTCGAC 
GCTGCGTTCG CCGGACAGCC GGCCGTGGTC GAAACCGAAT TCGCCAAGGC CATGGTCGCC 
GGCACCTATC CGGGCCTCGT CATTCTGGCC GCGCAACGTC AGGTCGCCGC CCTGCACAAG 
GCGGCGCTGG CGATGGAAGG CGGCGCGTCG GCCTCATCGG CCGCCGAGAG CGGATTTCCG 
CGGCTGCACT TTTCGCGCAA GACAGCGGTG GAAACGGCGC TGCGCAACTT CAGCGCCGCG 
CGGCTGCTCC AGGTGATGGA TCAGCTTGCG GTTGCCGCCC TGGAGGCGCG CAAGCAGACG 
GTGCTGGCGC CCGTGATTGC ACAGCGCGCG CTGATGTCGA TCGCGGTGAA CGCGCGGAGA 
AGGGGATGA 

 

Protein sequence

MVALRGKDVD SFLARPDPGR PIILLYGPDA GLVRERADAL MASAVDDPSD PFSLVRLDGD 
DLATEPSRLV DEAMTVPLFG GRRAIRVKAG TRNFAGGIET LADSAIQDCR IVIEAGELRP 
EAPLRKACER AKNAVAIACY PDTERDLARL IDDELRLSNL KIAPDARATL MSLLGGDRQA 
SRNELRKIAL YAHGQREIAL DDVMAVVSDA SDFKLDPIVD AAFAGQPAVV ETEFAKAMVA 
GTYPGLVILA AQRQVAALHK AALAMEGGAS ASSAAESGFP RLHFSRKTAV ETALRNFSAA 
RLLQVMDQLA VAALEARKQT VLAPVIAQRA LMSIAVNARR RG