Gene Nham_0003 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNham_0003 
SymbolrecF 
ID4029829 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNitrobacter hamburgensis X14 
KingdomBacteria 
Replicon accessionNC_007964 
Strand
Start bp3021 
End bp4160 
Gene Length1140 bp 
Protein Length379 aa 
Translation table11 
GC content70% 
IMG OID637968537 
Productrecombination protein F 
Protein accessionYP_575365 
Protein GI92115636 
COG category[L] Replication, recombination and repair 
COG ID[COG1195] Recombinational DNA repair ATPase (RecF pathway) 
TIGRFAM ID[TIGR00611] recF protein 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.0714428 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATCCCCT CCCGCATTCG CCGTTTGAGC CTCACCCACT TCCGCAACTA CCGCGCGGCT 
GCGCTCGAGA CGCGCAGCGA CGTGGTCGTG CTGGTCGGGC CTAACGGCGC CGGCAAGACC
AATTGCCTTG AGGCGATATC GCTGCTGTCG CCGGGACGCG GATTGCGGCG CGCCACGCGC
GAGGAGGTCG CGGATCATCG GGGCGACGGC TCCTGGGCGG TTTCGGCCGA GGTGGAAGGC
GCGCTCGGTC TGGCGACGCT CGGCACCGGC ATCGACGCAC CGGGCAGCGA CGCGGCATCG
AGCGGCCGGC GCTGCCGGAT CGACCGCGAG CCAGCAGGCT CCGCGGCGGC GTTTGGCGAT
CACCTACGCA TGGTGTGGCT GACGCCTTCG ATGGACGGCC TGTTCGGTGG CGCAGCGTCG
GAACGGCGGC GCTTCTTCGA CCGCTTGGTG CTGGCGATCG ACAGCGACCA TTCCGGCCGC
GTCTCGGCGC TGGAGCGCAG CCTGCGCTCG CGCAACCGTC TGCTCGAGAC ACGCAACTCC
GACGACCATT GGTGCGACGC CGTCGAGCGC CAGACCGCAG AGCTTGCGGT TGCGGTCGCG
GCGATGCGCG CGCAAACCGT GACGCGCCTT GCGGCCGCGC TGGAGGCGCG CGGCGCGGCC
TCCGCATTCC CATCGGCAAG GATCGGGCTC GACGGCTGGA TGGAAAATGC GCTGCTCACC
GAGCCGGCGA CGGCGGTGGA GGACCGCTAC CGCGAGATCC TGCGCGCCAA CCGCGCCCGC
GATGCCGCCG CCGGCCGCAC GCTCGATGGC CCGCATCTCA CCGACCTCGA GGTGATCTAC
GCCCCGAAAT CCATGCCGGC GCGCGACGCC TCCACCGGCG AGCAGAAAGC GCTCTTGATC
GGACTGGTGC TCGCCCATGC TGGTCTCGTC GCCGAGATGA CGGGAATCGC ACCGCTGCTG
CTGCTCGACG AAGTCGTGGC ACACCTCGAT CCCGACCGCC GCGGCGCGCT GTTCGGCGAA
CTCAAAGGCC TCGGCGCCCA GGTCTGGATG AGCGGAGCCG ACCCGGCCGC GTTCGCGAAC
GTTGGCGCCG GCAGCGAGAT TTTCGACGTC GACGCGGGAC GGATCGCCCA AAGACAATGA
 
Protein sequence
MIPSRIRRLS LTHFRNYRAA ALETRSDVVV LVGPNGAGKT NCLEAISLLS PGRGLRRATR 
EEVADHRGDG SWAVSAEVEG ALGLATLGTG IDAPGSDAAS SGRRCRIDRE PAGSAAAFGD
HLRMVWLTPS MDGLFGGAAS ERRRFFDRLV LAIDSDHSGR VSALERSLRS RNRLLETRNS
DDHWCDAVER QTAELAVAVA AMRAQTVTRL AAALEARGAA SAFPSARIGL DGWMENALLT
EPATAVEDRY REILRANRAR DAAAGRTLDG PHLTDLEVIY APKSMPARDA STGEQKALLI
GLVLAHAGLV AEMTGIAPLL LLDEVVAHLD PDRRGALFGE LKGLGAQVWM SGADPAAFAN
VGAGSEIFDV DAGRIAQRQ