| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Csal_3053 |
|---|
| Symbol | |
|---|
| ID | 4028049 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chromohalobacter salexigens DSM 3043 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007963 |
|---|
| Strand | - |
|---|
| Start bp | 3402348 |
|---|
| End bp | 3403388 |
|---|
| Gene Length | 1041 bp |
|---|
| Protein Length | 346 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637968265 |
|---|
| Product | twitching motility protein |
|---|
| Protein accession | YP_575096 |
|---|
| Protein GI | 92115168 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG2805] Tfp pilus assembly protein, pilus retraction ATPase PilT |
|---|
| TIGRFAM ID | [TIGR01420] pilus retraction protein PilT |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.39006 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATATTA TCGAACTGCT GGCGTTCTCG GCAAAGCAGA AGGCCTCCGA CCTGCACCTG
TCCGCCGGGC TGCCGCCGAT GATTCGCGTC GATGGCGACA TCCGCCGGCT CAACGTGCCG
CCGATCGAGG ATCGTGAGGT CCGCAAGCTG ATCTACGCGA TCATGAACGA TCAGCAGCGC
CGCGACTACG AAGAGGCGCT CGAGCACGAT TTCTCGTTCG ATGTGCCGGG GGTGGCGCGC
TTCCGCGTCA ACGTCTTTCA CCAGGGGCGC GGTGCCGGCG CCGTCTTCCG CACCATTCCC
AGCGAGGTGC TCACTCTCGA CGACCTGGAA CTGGGCGAGG TATTTCGCCG TCTGTCCTCC
TTGCCGCGAG GCCTGGTGCT GGTGACGGGG CCGACCGGCT CGGGCAAGAG CACGACCTTG
GCGGCGATGA TCGACTACGT CAACGAAAAC TACTACCAGC ATGTGTTGAC CATCGAGGAC
CCGGTGGAAT TCGTGCACCG CAGCAAGCGC AGCCTCGTCA ATCAGCGCGA GCTTCACCGC
GACACGCGCA GCTTCGCCAC GGCGTTGCGT TCGGCACTGC GCGAGGATCC GGACGTGATC
CTGGTCGGCG AACTGCGCGA CCTGGAGACC ATCCGCCTGG CGTTGACCGC CGCCGAAACC
GGCCACCTGG TGTTCGGTAC TCTGCACACC ACGTCGGCCG CCAAGACGGT GGACCGCATC
ATCGATGTCT TTCCCGGCGA CGAAAAAAGC ATGGTGCGGT CGATGCTGTC CGAGTCGTTG
CAAGGGGTGA TCTCGCAGGT GCTGCTCAAG CGTGAGGGTG GCGGGCGCGT GGCGGCGCAC
GAGATACTCG TCGCCAGCGG CGCGGTGCGA AACCTGATAC GCGAAAACAA GCTGGCGCAG
ATGTACTCCT CGATCCAGAC CGGCGGCAGC CTGGGCATGC AGACTCTGGA TGCGGCGCTT
TCGCGGCTGG TGTCGCAGGG TATCGTTTCG CGTGCCGAGG CGCAGGCCAA GGCGAAGGAC
GGACGCGTGC TGGGTGTGTG A
|
|---|
| Protein sequence | MDIIELLAFS AKQKASDLHL SAGLPPMIRV DGDIRRLNVP PIEDREVRKL IYAIMNDQQR
RDYEEALEHD FSFDVPGVAR FRVNVFHQGR GAGAVFRTIP SEVLTLDDLE LGEVFRRLSS
LPRGLVLVTG PTGSGKSTTL AAMIDYVNEN YYQHVLTIED PVEFVHRSKR SLVNQRELHR
DTRSFATALR SALREDPDVI LVGELRDLET IRLALTAAET GHLVFGTLHT TSAAKTVDRI
IDVFPGDEKS MVRSMLSESL QGVISQVLLK REGGGRVAAH EILVASGAVR NLIRENKLAQ
MYSSIQTGGS LGMQTLDAAL SRLVSQGIVS RAEAQAKAKD GRVLGV
|
|---|
| |