Gene Csal_3015 details

Gene Information

• Locus tag: Csal_3015
• Symbol: rimM
• ID: 4028981
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Chromohalobacter salexigens DSM 3043
• Kingdom: Bacteria
• Replicon accession: NC_007963
• Strand: -
• Start bp: 3356542
• End bp: 3357096
• Gene Length: 555 bp
• Protein Length: 184 aa
• Translation table: 11
• GC content: 65%
• IMG OID: 637968221
• Product: 16S rRNA-processing protein RimM
• Protein accession: YP_575058
• Protein GI: 92115130
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0806] RimM protein, required for 16S rRNA processing
• TIGRFAM ID: [TIGR02273] 16S rRNA processing protein RimM

Plasmid Coverage information

• Num covering plasmid clones: 7
• Plasmid unclonability p-value: 0.00120588
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCGCACG AGACCGGTGG CGCCGACACG GCGCAAGACG ACGAGCACGT GGTGCTCGGC 
CGCCTGACCA GTCCCTACGG CGTGAAAGGG TGGCTGAAGG TGTATTCGTA CACCAGCCCC 
ATCGAGGGCA TCTTCGAGCA TGCCGAGTGG GTGTTGTCGA AGCGAGGCGA GCGCCGAGCG 
TGCAAGCTGA GCCAGGGGCG CCCCCATGGC AAAGGGCTGG TCGCCAGCCT GGAAGGCATC 
TCGAGCCGCG AACTGGCCGA GCAATGGGCC GGCGCGGACA TTCTCCTGCC CAAGCAGGCG 
TTGCCGGCGC TCGCGCCGGG AGACTATTAC TGGTACCAGC TCGAAGGCCT GCGGGTCGAG 
ACGCTGGACG GTGAATGCCT GGGGCAAGTG AACTACCTCT TCGAGACGGG CGCCAACGAT 
GTACTGGTGA TCCGGCCCAG CGAGGCGAGT CTCGATGAGC GGGAACGGCT GTTGCCGTTT 
CTGCCCGACG ACGTGATCCG TCAAGTGGAT CTCGACGCCG GGCGAATGAT AGTGGATTGG 
GATCCCGAAT TCTGA 

 

Protein sequence

MSHETGGADT AQDDEHVVLG RLTSPYGVKG WLKVYSYTSP IEGIFEHAEW VLSKRGERRA 
CKLSQGRPHG KGLVASLEGI SSRELAEQWA GADILLPKQA LPALAPGDYY WYQLEGLRVE 
TLDGECLGQV NYLFETGAND VLVIRPSEAS LDERERLLPF LPDDVIRQVD LDAGRMIVDW 
DPEF