Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Csal_2835 |
Symbol | secD |
ID | 4028521 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chromohalobacter salexigens DSM 3043 |
Kingdom | Bacteria |
Replicon accession | NC_007963 |
Strand | + |
Start bp | 3163890 |
End bp | 3165740 |
Gene Length | 1851 bp |
Protein Length | 616 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 637968043 |
Product | preprotein translocase subunit SecD |
Protein accession | YP_574880 |
Protein GI | 92114952 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0342] Preprotein translocase subunit SecD |
TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family [TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCTCAACC GTTATCCCCT GTGGAAGTAT CTGCTGATAC TCGTCGTACT CCTCGTCGGC CTCATCTACG CGTTACCCAA TCTTTACCCC GCCGACCCCG CCGTTCAGAT CAGCAGCACC GCCAGCGGCG CCGCGCTCGA CCAAGAGCGT CTCGACCGCC TGACTCAAGC GCTCGAGGAC AAGGACATCG CCATCAAGCA AAGCGAGCTG GATGGCAACA GCGCCCTGAT TCGTCTCGAA CGGGCCGGCC AGCAGGTCGC CGCCCGCGAG ATCATCGACG AACGCCTGGG CGACGCCTAC ACCGTGGCAC TCAACCTGGC CGACGCCACC CCCGGCTGGC TCCAGGCGCT TTCCGCCACG CCCATGAAAC TGGGGCTCGA CCTGCAGGGC GGGGTGCACT TCCTGCTCGA GGTGGACATG GATGCGGCCG TCGAGCAGCG CCTCGAAGCC AATGCCAGCG CCGTGCGCGA CCTGCTTCGC GACGAGCGCA TCCGGTATCG CGATACCAGC ATCGACGGAC GCGCGATCAC CTTCCAGTTC GCCAACGCCG ACGACCGCAA CGCAGCGCGT GGCTTGATCA CCGACCAGTT CCCGGATTTC GAATACAGCA CGCCCGACAC CGAACGTGGC GCCAGCCTGA CGATGACGTT CACCGATCAG GCCGTGCAGG ACCTGCAGGA TTATGCCGTC AATCAGAACC TGACCACGAT CCGCAACCGT GTCAACGAAC TCGGCGTCTC GGAGCCTCTG GTGCAGCGCC AGGGCCCCAG CCGCATCGTC GTCGAGCTAC CCGGCGTGCA GGACACCGCC GCCGCCAAGC GCATCGTCGG CGCCACCGCC AATCTGGAAT TCCGCCTGGA GGCACGGCCG GACACGCCGG AGCGCGAGAT CGAAACGCTC CCCTTCCGCA ATGATGAGGG CCGCAGCGCG GACCTGATGC GTGACATCAT CGTGACGGGC GACCATGTGT CCAGCGCCAG CCGGAGCTTC GACGAAAACA ACCGTCCGCA GGTCAACATC AACCTCGACG GTACCGGCGG CTCGATGATG AGTCGTGCCA CGCGCGCCAA TATCGGGCGC AACATGGCGG TCGTCTTCAT CGAGCACAAG ACCCGCACCC GCACGGTCAT GGAAGACGGC GAGGAAGTCG AAAAGCGCGA GGCCTATACC GAGCGCGGCA TCATCAGCCT GGCCACCATC CAGAGCACGC TGGGCAACCG TTTCCGCATC ACCGGACTCG AATCCGCCAG CGAGGCCGGT GACCTGGCCC TGCTGCTGCG CTCCGGGTCT CTCGCGGCAC CGATCTACTT CGCCCAGGAG CGCACCATCG GCCCGAGCCT GGGGGCGCAG AACATCGCCC AGGGCATCAT GTCGGTGGAA GTCGGCCTGC TGCTCGTGGT GCTGTTCATG CTGGCGCGCT ACAAGGCCTT CGGTGTGGTC GCCAACGTCT CGCTGGGTCT GAACCTGGTA CTGCTGGTCG CCGCCATGTC ATTGCTCGGC GCCACGCTGA CCCTGCCCGG CATCGCCGGC ATCGTCCTGA CCCTGGGCAT GGCGGTGGAT GCCAACGTCC TGATATTCGA GCGAATACGC GAGGAGCTGC GCGCCAAGAT GCCGGTGCAA CAGGCCATTC ATACCGGCTT CGAGCGTGCC TTCACCTCGA TCGTCGATGC GAACATCACC ACCTTGCTGG TCGCGGTCAT CCTGTTCTCG ATCGGCACCG GCCCGGTCAA GGGCTTCGCC GTAACGCTGT CGCTGGGCAT CCTGACGTCG ATGTTCACCG CCATCATGGT GTCGCGCGCC ATGATCAACC TCACCATCGG CGGGCGCCCG CTGAAGAAAA TCTGGATCTG A
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Protein sequence | MLNRYPLWKY LLILVVLLVG LIYALPNLYP ADPAVQISST ASGAALDQER LDRLTQALED KDIAIKQSEL DGNSALIRLE RAGQQVAARE IIDERLGDAY TVALNLADAT PGWLQALSAT PMKLGLDLQG GVHFLLEVDM DAAVEQRLEA NASAVRDLLR DERIRYRDTS IDGRAITFQF ANADDRNAAR GLITDQFPDF EYSTPDTERG ASLTMTFTDQ AVQDLQDYAV NQNLTTIRNR VNELGVSEPL VQRQGPSRIV VELPGVQDTA AAKRIVGATA NLEFRLEARP DTPEREIETL PFRNDEGRSA DLMRDIIVTG DHVSSASRSF DENNRPQVNI NLDGTGGSMM SRATRANIGR NMAVVFIEHK TRTRTVMEDG EEVEKREAYT ERGIISLATI QSTLGNRFRI TGLESASEAG DLALLLRSGS LAAPIYFAQE RTIGPSLGAQ NIAQGIMSVE VGLLLVVLFM LARYKAFGVV ANVSLGLNLV LLVAAMSLLG ATLTLPGIAG IVLTLGMAVD ANVLIFERIR EELRAKMPVQ QAIHTGFERA FTSIVDANIT TLLVAVILFS IGTGPVKGFA VTLSLGILTS MFTAIMVSRA MINLTIGGRP LKKIWI
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