Gene Csal_1733 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCsal_1733 
Symbol 
ID4028948 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChromohalobacter salexigens DSM 3043 
KingdomBacteria 
Replicon accessionNC_007963 
Strand- 
Start bp1975829 
End bp1976815 
Gene Length987 bp 
Protein Length328 aa 
Translation table11 
GC content65% 
IMG OID637966921 
ProductTRAP dicarboxylate transporter, DctP subunit 
Protein accessionYP_573784 
Protein GI92113856 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component 
TIGRFAM ID[TIGR00787] tripartite ATP-independent periplasmic transporter solute receptor, DctP family 


Plasmid Coverage information

Num covering plasmid clones5 
Plasmid unclonability p-value0.000308967 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCGTTTCA AGAAACTCAC GCTCATCGCC ACCAGCCTCT CCATCGCCGG CCTCGGCAGC 
TTGAACCTCG CCCAGGCCGC CACCGAGATC CGCGTCGCCT ACGGCAACCA GCCCGGCGAG 
CCGGTCGATG TCGCCGTCAA GGAATGGGCG GAAAACGTCG AGCAGGCCAG CGACGGCGAA 
CTCACGCTCA GCGCGTTCCC CGCCAGCCAG CTCGGCTCCG AGACCGACGT CATGGAACAG 
GCGCGCTTCG GCTCGCCGAT CATCACCATC ACCGCCTACA GCAACTTCAT GAGCTCGGTG 
CCCGACCTGT CGGTGCTCGA CGCGCCCTAC CTGGCCGACA GCTTCGACGA CAAGCTCAAG 
GTCTTCGACT CCGAGTGGTT CGCCGAGCAG AGCCAGAAGG TCGAGGAAGC CGGTTATCAC 
ATCGTCATTC CCAACACCGT GTACGGCACG CGCCACCTGC TCTCCCGCGA GCCCGCCACC 
ACGCCCGAGG CACTCGACGG CGTGAAGATC CGCGTGCAGA ACTCGCCGAT GTACGTCGAG 
GCCATGCGCT CGATGGGCGC CACCCCCACG CCCATGTCGC TGGGCGACGT CTATCCGGCA 
CTGGCCCAGG GCATGGTCGA CGGGGTCGAG AACCCCACGC CGGTACTGTT CGGCGGCAAG 
TTCCACGAAG TCGTCAAGCA CCTCAACCTG ACCGGCCACA TGAACACCGT GGCGCCGTTC 
GTCACCGGCA AGGCGTTCTG GGACCAGCTC AGCGAGGAAA ACCGCGAGAT CCTGACCGAG 
ACCGGCCAGG ACATGGCCGC GCACCTGCGT GAACTGGTCG AAAAGGAAAG CGACATCGCC 
CTGCAGAAGC TCAAGGATGC CGGCGTCGAG GTCCACGAAG TGGATACGCA GCCGTTCCGC 
GAACGCGCCG CGGAGCAAGT GCCCGCTGCC TTCCCGCAGT GGAGCGACGG CCTGTACGAG 
CAGGTTCGCC AGATCATCAA CGGATAA
 
Protein sequence
MRFKKLTLIA TSLSIAGLGS LNLAQAATEI RVAYGNQPGE PVDVAVKEWA ENVEQASDGE 
LTLSAFPASQ LGSETDVMEQ ARFGSPIITI TAYSNFMSSV PDLSVLDAPY LADSFDDKLK 
VFDSEWFAEQ SQKVEEAGYH IVIPNTVYGT RHLLSREPAT TPEALDGVKI RVQNSPMYVE 
AMRSMGATPT PMSLGDVYPA LAQGMVDGVE NPTPVLFGGK FHEVVKHLNL TGHMNTVAPF 
VTGKAFWDQL SEENREILTE TGQDMAAHLR ELVEKESDIA LQKLKDAGVE VHEVDTQPFR 
ERAAEQVPAA FPQWSDGLYE QVRQIING