| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Csal_1659 |
|---|
| Symbol | |
|---|
| ID | 4029121 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chromohalobacter salexigens DSM 3043 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007963 |
|---|
| Strand | + |
|---|
| Start bp | 1887948 |
|---|
| End bp | 1889174 |
|---|
| Gene Length | 1227 bp |
|---|
| Protein Length | 408 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 637966848 |
|---|
| Product | type II secretion system protein E |
|---|
| Protein accession | YP_573711 |
|---|
| Protein GI | 92113783 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4962] Flp pilus assembly protein, ATPase CpaF |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCACTGC CACGTTTTGG ACAACGTCAC CTGCACGTCG TCGCCGACCC CGACGACCCG
GCCTTCAAGT CGGAGCTGCA CCGCAGCGTC ATCGAGCGTT TCGAGGACGA AGGCATGGAA
CTCGACGCCG AACCCAGCGC GCTGTACACG CGCCTGGAAG ACTGCGTCCG CGACTGGCTT
GCCGAGCGCG GCGAGTTCCT GCCCGACGAG GCCATGCACA CGGTCCTGCA ATCGCTGTAC
CACGAAATGA CCGGCTACGG CCCGCTGCAA CCTCTGCTGC GGGACGACGA CATCACCGAC
ATACTCATCA ACGGCCCCGA TCACGTGTTC GCCGAGCGCA ACGGCAGGCT CGAGCGCGTG
CCCCAGCAGT TCCTCAACGA CGCCCACGTG CTGCGCGTGG TACGCCGCAT GCTGGCGCCG
CTGGGCCGCC GCCTGGATGA ATCCAGCCCC ATGGTCGACG CCCGCCTGGC GGACGGCTCG
CGGGTCAATG CCATCATCCC GCCGCTGGCG CTGGATGGCC CCTGCGTCTC GATCCGCAAG
TTCCGTCACG ACGCCATGAG CGCGCTGGCG CTGGTCGAAC GCGGCGCCTT GCCGGCGGAC
CTGCTCGGCG AGCTGGAGCA GGCCGTGGAG CGCCGCCGCA ACATCCTGAT CAGCGGCGCC
ACCGGGGCAG GCAAGACCAC CTTGCTCAAT GCCCTGAGCC AGTCGATTCC CCGTCACGAA
CGCGTGGTCA CCATCGAGGA CGCCGCCGAA CTGCAACTGC GCAACAACCA CATCGTGCGG
CTCGAGACAC GCCCCGCCAA TACCGAGGGT GAGGGCGAGA TCACCGCCCG CCAGCTGGTG
CGCAACGCGC TGCGCATGCG TCCCGACCGG GTGATTCTCG GCGAGAGCCG TGGCGACGAA
GTGCTCGACG TGCTGCAGGC CATGAACACC GGCCACCTGG GCTCGATGAG TACCGTTCAC
GCCAACGCCG CCGCCGACGC CCTGGTGCGC CTGCAGATGA TGGTGCGGCT CTCGGGCTTC
CAGGGTTCGG ACACCCTGAT CAACCGCATC ATCGCCACCG CGCTGGACCT GGTGGTGCAC
GTCACGCGTG ACGTCAATGG CCACCGCCAC GTGCTCGAAG TGCAGCGGGT GGTGGGCTTC
GACGATGACA CCATCAAGCT CGAGACGCTC TATCACCGCG ACGAGGCCCC CTGGACCCAC
GTCGCCAACG CCAGGGTGCG GGCATGA
|
|---|
| Protein sequence | MALPRFGQRH LHVVADPDDP AFKSELHRSV IERFEDEGME LDAEPSALYT RLEDCVRDWL
AERGEFLPDE AMHTVLQSLY HEMTGYGPLQ PLLRDDDITD ILINGPDHVF AERNGRLERV
PQQFLNDAHV LRVVRRMLAP LGRRLDESSP MVDARLADGS RVNAIIPPLA LDGPCVSIRK
FRHDAMSALA LVERGALPAD LLGELEQAVE RRRNILISGA TGAGKTTLLN ALSQSIPRHE
RVVTIEDAAE LQLRNNHIVR LETRPANTEG EGEITARQLV RNALRMRPDR VILGESRGDE
VLDVLQAMNT GHLGSMSTVH ANAAADALVR LQMMVRLSGF QGSDTLINRI IATALDLVVH
VTRDVNGHRH VLEVQRVVGF DDDTIKLETL YHRDEAPWTH VANARVRA
|
|---|
| |