| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Csal_1592 |
|---|
| Symbol | |
|---|
| ID | 4027554 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chromohalobacter salexigens DSM 3043 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007963 |
|---|
| Strand | - |
|---|
| Start bp | 1811577 |
|---|
| End bp | 1815104 |
|---|
| Gene Length | 3528 bp |
|---|
| Protein Length | 1175 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637966781 |
|---|
| Product | ribonuclease E |
|---|
| Protein accession | YP_573644 |
|---|
| Protein GI | 92113716 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1530] Ribonucleases G and E |
|---|
| TIGRFAM ID | [TIGR00757] ribonuclease, Rne/Rng family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.690225 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAACGAA TGCTCATCAA CGCGACACAG CCCGAAGAGC TGCGCGTCGC GCTCGTCGAT
GGACAACGCC TGTACGATCT CGACATCGAA TCCGGTGCTC GGGAACAGAA GAAAGCCAAT
ATCTACCGTG GCCGAATCAC GCGGATTGAG CCCAGCCTCG AAGCCGCCTT CGTCGATTTC
GGCGCCGAAC GACACGGCTT CCTGCCGCTC AAGGAAATCT CCCGCGAGTA TTTCACCAAG
GAGCCTTCCG GACGTCCCAA CATCAAGGAA GTGCTCAAGG AAGGCCAGGA AGTCATCGTC
CAGGTGGACA AGGAAGAGCG CGGCAACAAG GGCGCCGCGC TGACCACCTT CATCAGCCTG
GCCGGCCGCT TCCTCGTGCT GATGCCCAAC AACCCCCGTG CCGGCGGCAT TTCGCGGCGC
ATCGAGGGGG ATGATCGGGC CCAGCTCAAG GACGCCATGG GCCAGCTGAC CGTGCCCGAC
AAGATGGGCG TCATCGTGCG CACCGCCGGC ATCGGTCGTT CCCCCGAGGA ACTGCAGTGG
GACATGGATT ACCTCGTGCA GGTCTGGGAG GCCATCACCG AGGAAGCCGG CAAGCGTAGC
GCGCCGTTTC TGATCTATCG CGAATCCAAC GTCATCATTC GCGCGATGCG CGACTATCTG
CGCCACGACA TCGGCGAGGT CTTGATCGAC AGCCCCGAGG TGCATGAAGA GGCCCTGCAT
TTCATCCGTC AGGTCATGCC CTCCTACCAG AACAAGATCA AGCTCTACGC CGACGACGTG
CCGCTGTTCT CGCGTTTCCA GATCGAGTCG CAGATCGAGA CCGCCTATCA GCGCGAGGTC
AAGCTCCCGT CGGGCGGCGC CGTGGTCATC GACCACACCG AGGCACTGGT GTCCATCGAC
ATCAACTCGG CGCGCGCCAC GCGCGGCAGC GATATCGAGG AAACCGCGCT GCAGACCAAC
CTCGAGGCCG CCGACGAGAT CGCGCGCCAG TTGCGTCTGC GCGATATCGG CGGCCTGGTG
GTCATCGACT TCATCGACAT GACGCCGGCC AAGAACCAGC GTGAAGTGGA AAACCGCGTC
CGCGACGCGC TCAAGCTCGA CCGTGCGCGC GTGCAGATCG GGCGCATCTC GCGTTTCGGC
CTGATGGAAA TGTCGCGTCA GCGCCTGCGC CCGTCGCTGG GCGAGACCAG CGGCGTGGTC
TGCCCGCGCT GCAACGGCCA GGGCACCATC CGCGACGTGC GCTCCATTTC GCTGTCGATC
ATGCGCCTCA TCGAGGAAGA GGCCATGAAG GAACGCAGTT CCCAGATTCG CGCCATTCTC
CCGGTGCCCG TGGCGACCTA CCTGCTCAAC GAAAAGCGCA GCGTGCTCAA CGATATCGAG
CAGCGCCAGG GAGTGCAGGT CGTCCTTCTG CCCAATCCCG ACATGGATAC GCCGCATTAC
GACGTGCAGC GCCTGCGTGA CGACCAGGTC AGCGAGGAAG ACGGCCAGCG CTCGAGCTTC
GAGCTGCCCA CCACCACCGA GCTGACACAG GAACCCGATC CGGCACTCGA CAAGCCGATG
CAGCGCGCGG AAGCGGCGGT CAAGAGCGTG GCCCACAACG CCCCGGCGCC GACCTCGCTG
CAGCACGATA CCGCACCGCC GGCGACGCCG ACGCCGGCGC CCGCCGCCGA CGCCCCGGCC
TCCACGCCGG CCGAGAGCGG CCTGTTCTCA CGTCTGGTAA AAGGACTCGG CAAGCTGCTC
AACGGCGAGG ACAGCACCTC GCCGTCGAAG CAGTCGAACG ATCAGGCCCA GCAGAGCGGA
GCCTCGAAAA CCACCAGCGA GGCACGGCGT CAGCGGCAAG GCAGCGACCA GTCGTCCACC
TCGCGCAGCG ACGGTGACAC CGGCAGCAAG CAGCGTCAGA ACGACGATAG CCGTCGCGAT
GCCGGCTCCG GCAACGGTCG CGGTGGCAAT CGCCGGCGTC GCAACGGCGA GGAATCGCAG
GATCGCCAGG CGTCGCGCAG CGACAACCGT GATGGCAACC GCAGCTCGCG TTCCTCGCGC
GGCAATGGCG GCAATGGTGG CCGTAACGAG AACGCACGCG GCAGCGGTGG CAGCGACAAG
GGCCGCCAGG ATACGCGTAG CGACTCTCGC AACGACGCGC GCAACGACTC GCGCAGCGAT
TCTCGTAACG ATGGACGCAA CGCCACCAAG GGCGGCAACA AGCCCCGCGA GGAAAACAAG
GACGCCAAGG CCGGCAAGCC CAAGGCGGAA ACGCCTTCGC AGAGCGCGCC CGACAAGCAG
GCCACGTCCG ACAAGCAGAC GACGCCGAGC CAGGATGACG CGCCGAAGAG CGACGGCAAG
CCGAAGCGCA CGCGCAACAA TCCGCGTCAG CGCAGTCGCA AGCATGCCGT GAATCCGAAC
GCGGTCGCCG AGCAGGAAAA GCTGCAGGCG CAGCAGGAAG CCGAAGGCGC AACGTCGACG
GGCGACAACA CACAGCCGCA GGCCACCGCT GCCCAGGCTT CGCCCGAGGC CGAGCCGACG
AGCACGGCAC CCAGCGATGC GCCGGCCGCA GCGGCCGCCC CCACCGACGA GGATGAAAGC
TCGCAGGCAG CGGCGGCCAA GTCGTCGCAA GATGCCAAGT CGCGCAACGC CAAGTCCAAG
CGCTCGCGGA ACGCGTCCAA GCCGGCCCGG ACTGCCTCGG AAACCGCCGA CGCGGCACCG
CAGGGCAAGA CGTCGGCCGA CGCACCGGAA ACGGCAGCTG AAGCACCGTC CCAGCCCCGC
GAGGCAGCGG CCGCCGCGCA GCCGGCCGAT AGTGCCACCT CCGAGGCACC GGCGACCGCA
AATGCGGACA CTCGAGCCTC TGCCCCGGCG CCCTCGGCCG ATGACGCCTC CGCGCTCAGC
GAACCGAAAG CGCCGCGCGA TGCGACACCG AGCGCCGAGG CACCGGCCGA CGAGACCAGT
GCGTCCGACG CGCCTCGCGG CGAGGTCAGC GACTCCCAGC CGGCATCCAG CGCTGCCGCC
GACGAAGCCA CGTCCACTGG ACGCGACACC GTCGAGCAGG AGGCTGCCAC CCCGGTGACG
AAGGACGAGG CGGCGACAGC GCCTGCCACG TCCTCTGCGG ACGCCGACGT CGACACACGT
CAGGACGCCG CGTCCTCCAC GGCAACGCCG CAGGACGACA CGCTAGCCAC GCCTGCATCG
CAGGCGGAGC AGAAGGCATC GACCGATGCA CCGGCGCCGC AGGCGGAGCC GACAACGCCG
GCCGCCGCTG CCGCCTCGTC ATCCGACGAG CAAGCACCGG CCGAGGTCAG CGAGTCCCAG
CCCCAGGCGG AGCCGAAAGC GCCGAGCGAC GCTTCCGCAA CGTCATCGGA GGAGAAGGCA
TCCACCGAGA CGCCTGCACC GCAGCCGGAG CAGACGGCCT CGACAGAGGC GTCCGAGCCG
CAGCAGGCGA CGGCATCCGC ACCGCGTCGT CGCCGTCGCG CGCACAACGA CCCTCGCGAA
CAGCGTCGTC TGCAGGAGAA CCTCTTCCGG GGCGACGATA ACGCCTGA
|
|---|
| Protein sequence | MKRMLINATQ PEELRVALVD GQRLYDLDIE SGAREQKKAN IYRGRITRIE PSLEAAFVDF
GAERHGFLPL KEISREYFTK EPSGRPNIKE VLKEGQEVIV QVDKEERGNK GAALTTFISL
AGRFLVLMPN NPRAGGISRR IEGDDRAQLK DAMGQLTVPD KMGVIVRTAG IGRSPEELQW
DMDYLVQVWE AITEEAGKRS APFLIYRESN VIIRAMRDYL RHDIGEVLID SPEVHEEALH
FIRQVMPSYQ NKIKLYADDV PLFSRFQIES QIETAYQREV KLPSGGAVVI DHTEALVSID
INSARATRGS DIEETALQTN LEAADEIARQ LRLRDIGGLV VIDFIDMTPA KNQREVENRV
RDALKLDRAR VQIGRISRFG LMEMSRQRLR PSLGETSGVV CPRCNGQGTI RDVRSISLSI
MRLIEEEAMK ERSSQIRAIL PVPVATYLLN EKRSVLNDIE QRQGVQVVLL PNPDMDTPHY
DVQRLRDDQV SEEDGQRSSF ELPTTTELTQ EPDPALDKPM QRAEAAVKSV AHNAPAPTSL
QHDTAPPATP TPAPAADAPA STPAESGLFS RLVKGLGKLL NGEDSTSPSK QSNDQAQQSG
ASKTTSEARR QRQGSDQSST SRSDGDTGSK QRQNDDSRRD AGSGNGRGGN RRRRNGEESQ
DRQASRSDNR DGNRSSRSSR GNGGNGGRNE NARGSGGSDK GRQDTRSDSR NDARNDSRSD
SRNDGRNATK GGNKPREENK DAKAGKPKAE TPSQSAPDKQ ATSDKQTTPS QDDAPKSDGK
PKRTRNNPRQ RSRKHAVNPN AVAEQEKLQA QQEAEGATST GDNTQPQATA AQASPEAEPT
STAPSDAPAA AAAPTDEDES SQAAAAKSSQ DAKSRNAKSK RSRNASKPAR TASETADAAP
QGKTSADAPE TAAEAPSQPR EAAAAAQPAD SATSEAPATA NADTRASAPA PSADDASALS
EPKAPRDATP SAEAPADETS ASDAPRGEVS DSQPASSAAA DEATSTGRDT VEQEAATPVT
KDEAATAPAT SSADADVDTR QDAASSTATP QDDTLATPAS QAEQKASTDA PAPQAEPTTP
AAAAASSSDE QAPAEVSESQ PQAEPKAPSD ASATSSEEKA STETPAPQPE QTASTEASEP
QQATASAPRR RRRAHNDPRE QRRLQENLFR GDDNA
|
|---|
| |