Gene Csal_0948 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCsal_0948 
Symbol 
ID4026802 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChromohalobacter salexigens DSM 3043 
KingdomBacteria 
Replicon accessionNC_007963 
Strand
Start bp1063164 
End bp1064405 
Gene Length1242 bp 
Protein Length413 aa 
Translation table11 
GC content65% 
IMG OID637966125 
Productsecretion protein HlyD 
Protein accessionYP_573004 
Protein GI92113076 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0845] Membrane-fusion protein 
TIGRFAM ID[TIGR01730] RND family efflux transporter, MFP subunit 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.297274 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAATCCA CGACAGGGAA TGATCGCCGG GGCCTTCTGG CCGTGGCATT GGCGGGCGTT 
CTGTTGATGG GCTGCAGCAG CGACGACGAG GCCCAGCAGC AGGCAGGCGA TACTTCCCCG
CCACCGAAAA AGGCGCAGGT CATGGAAATG ACCAAGCGCG ATATCGCGCT CGACAAGAGC
TATCCCGCCA TGCTGCGCAG CGATAACGAG GTGACGGTCG TGGCACGCGT GAGCGGAACT
CTCGAGGAGC GTCATTTCGA GCCCGGACAA CAGGTCGAGA AGGGCGAGAG TCTCTATACC
ATCGAGCCGG AAATCTATCA GGCGACCGTG CGTCAGCGCG AGGCGGATCT GCAGAGCGCC
CAGGCCGATG CGGAGCTGGC GCAGACCAAT GCCGACCGTT ATCAGCGGCT GCTCAAGCAG
AACTCGGTCA GCGTGCAGCA GCGCGATCAG GCCCTGGCCG ACCTCAAGGT CGCGCGTGCC
AGCGTGGCCC AGGCACAGGC GGCGCTCGAC AGTGCGCGCA TCGATCTGGA TTACACCGAT
GTCGAGGCGC CCGTGTCGGG CATGATCAGC CTCAGCGAGG TCAATGTCGG CAATCTGGTG
AACGATGGCA CCGAATTGGC GACCATCACG CCGCTCGATC CGTTGGAGGT CCGTTTCCAG
CTCCCGCAGG AAGAAGCCTT CGAGTTGCGC CGTCAGCGCC AGCAGCAGGG CAAGGAGGCG
GTGACCGCCG AGCTGGAAAT CCCAGCGTTG CCGGGGCAGA CCCTGGAAGG ACGCGTGGAA
TTCCTGGGAT CGCGGGTCAG CGAGAGCACC AGCACGGTGC AGGCCAATGC CTTTTTCGAC
AATCCCGGCG GGCTCTTCCT GCCCGGTCAG TTCGTGCGCG TCAAGCTGGA AGGCCTGAAG
CGCTACGATG TGTTCGCCGT GCCGGAAATC GCCGTGACGC AAGGGCTGAT GGGCCCGCAG
GTCTATGTGC TGAGCGATGA GGGCAAGGCG CGCACGCGTA CCGTGCAGCT CGGTGACACG
GCCGGCCCAT GGATGATCAT CAAGGACGGG CTCGAGGCGG GAGACCGCGT CGTGGTCAGC
GATCCGGGCA ACATCAGTGC CGGTGCGGCC ATCGATCCCC AGCCTTTCGA CGGCGATGCC
GAGGCGCTTT CCGACACCGA TGGCGAGAGC CGGAAGGCGC CGCCGAATGC CGAGGCGTCG
CCGGATGCGG CGAATCAGGG TCAGCAGGCA AGCGGAGCCT GA
 
Protein sequence
MESTTGNDRR GLLAVALAGV LLMGCSSDDE AQQQAGDTSP PPKKAQVMEM TKRDIALDKS 
YPAMLRSDNE VTVVARVSGT LEERHFEPGQ QVEKGESLYT IEPEIYQATV RQREADLQSA
QADAELAQTN ADRYQRLLKQ NSVSVQQRDQ ALADLKVARA SVAQAQAALD SARIDLDYTD
VEAPVSGMIS LSEVNVGNLV NDGTELATIT PLDPLEVRFQ LPQEEAFELR RQRQQQGKEA
VTAELEIPAL PGQTLEGRVE FLGSRVSEST STVQANAFFD NPGGLFLPGQ FVRVKLEGLK
RYDVFAVPEI AVTQGLMGPQ VYVLSDEGKA RTRTVQLGDT AGPWMIIKDG LEAGDRVVVS
DPGNISAGAA IDPQPFDGDA EALSDTDGES RKAPPNAEAS PDAANQGQQA SGA