| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Csal_0116 |
|---|
| Symbol | |
|---|
| ID | 4027042 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chromohalobacter salexigens DSM 3043 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007963 |
|---|
| Strand | + |
|---|
| Start bp | 139207 |
|---|
| End bp | 140268 |
|---|
| Gene Length | 1062 bp |
|---|
| Protein Length | 353 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637965267 |
|---|
| Product | uroporphyrinogen decarboxylase |
|---|
| Protein accession | YP_572179 |
|---|
| Protein GI | 92112251 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0407] Uroporphyrinogen-III decarboxylase |
|---|
| TIGRFAM ID | [TIGR01464] uroporphyrinogen decarboxylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.754255 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCATTGC AAAACGACCG CCTACTGCGT GCCTTGGCGC GCCAACCGGT AGACCGCACA
CCGGTGTGGA TGATGCGCCA AGCGGGCCGT TATCTGCCCG AATATCGGGA GACGCGCGGC
CAGGCCGGCA GTTTCATGGA CCTGTGCCGC AACGCCGAAC TGGCGTGCGA GGTCACCATG
CAGCCGCTTC GCCGCTATGC GCTCGATGCG GCGATCCTGT TTTCCGACAT CCTCACGATT
CCCGACGCCA TGGATCTGGG GCTGTACTTC GAAACGGGCG AAGGCCCCAA GTTTCGCAAG
ACGGTGCGCA GCGCCGAGGC TGTGGACGCC TTGCCGGTGC CGGATGCCGA GCGGGATCTC
GATTATGTGA TGAACGCGGT GCGCACCATT CGCCACGAAC TGGCGGACAG CGTGCCGTTG
ATCGGCTTTT CGGGCAGCCC CTGGACGCTG GCGACCTACA TGATCGAAGG CGGCTCGAGC
AAGGACTTCC GGCACGCCAA GGCATTGATG TACGGCGATC CCGCGGCGAT GCACGCGCTG
CTCGACAAGC TGGCGCGGTC GGTCACCGAC TACCTCAATG CGCAGATTCG TGCCGGAGCC
CAGATCGTGC AGATCTTCGA CACCTGGGGC GGCGTGTTGT CGACGCCGGC CTACCGCGAG
TTCTCGCTGG CCTACATGGC GCGCATCGTC GAAGGACTGA TCCGGGAGCA CGAGGGGCGC
CACGTGCCGG TGATCCTGTT CACCAAGCAG GGCGGCCAGT GGCTGGAGAC CATCGCCGAC
AGCGGCGCCG ATGCCGTGGG CCTGGACTGG ACCACCGAGC TGAGCGACGC CCGGGCCCGT
GTCGGGGATC GCGTGGCGCT GCAGGGCAAT CTCGATCCCA ATGTGCTCTT CGCCTCGCCC
CAGGCGATTC GCGATGAGGT GGCGCGCATT CTGGCCAGCT ATGGCAGCGG TCCCGGCCAT
GTCTTCAACC TGGGGCATGG TGTCAGCCAA TTCACTGATC CCGATCATGT CGCCGCCTTC
ATCGAGGCAC TGCATGAACT CAGCCCGCGT TATCATGGCT GA
|
|---|
| Protein sequence | MPLQNDRLLR ALARQPVDRT PVWMMRQAGR YLPEYRETRG QAGSFMDLCR NAELACEVTM
QPLRRYALDA AILFSDILTI PDAMDLGLYF ETGEGPKFRK TVRSAEAVDA LPVPDAERDL
DYVMNAVRTI RHELADSVPL IGFSGSPWTL ATYMIEGGSS KDFRHAKALM YGDPAAMHAL
LDKLARSVTD YLNAQIRAGA QIVQIFDTWG GVLSTPAYRE FSLAYMARIV EGLIREHEGR
HVPVILFTKQ GGQWLETIAD SGADAVGLDW TTELSDARAR VGDRVALQGN LDPNVLFASP
QAIRDEVARI LASYGSGPGH VFNLGHGVSQ FTDPDHVAAF IEALHELSPR YHG
|
|---|
| |