Gene Csal_0052 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCsal_0052 
Symbol 
ID4027231 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChromohalobacter salexigens DSM 3043 
KingdomBacteria 
Replicon accessionNC_007963 
Strand
Start bp60768 
End bp61955 
Gene Length1188 bp 
Protein Length395 aa 
Translation table11 
GC content64% 
IMG OID637965203 
ProductType I secretion membrane fusion protein, HlyD 
Protein accessionYP_572115 
Protein GI92112187 
COG category[V] Defense mechanisms 
COG ID[COG1566] Multidrug resistance efflux pump 
TIGRFAM ID[TIGR01843] type I secretion membrane fusion protein, HlyD family 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCCACGA CACTCAGCGA CCAGCAGTTG CAGCGGCAGC TTGGCGACCC ACGGGCCAAC 
CTGCGCCATC CACTTGCCCG CCCCGTGGTA TGGGCCGTCC TGGTCTGCCT GCTCAGTTTC
ATCGGCTGGT CCGCCTGGGC GCACATCGCC GTGGTGACCC ACGGCGAGGG CCGCGTGATC
CCGGTCAGTC GCATCCAGTC GATCCAGAGT CTGGAAGGCG GCATCATCGA TGAGCTCGAG
GTGCGCGAAG GCGACATCGT CGACAAGGGC CAGTTGCTGG TCAAGCTCAG CGGCACCCGC
TTCCGCAGCG CCTATCAGGA GACGGAAAAT CAGGTCCAGG CGCTGAAAGC CGCCATTGCC
AGGCTGCAGG CCGAAGTACT CGAGGCGGAT AGCATCGACT TCCCCGCGGA TGTCGATGCC
CAGAGCTCGC TGGCCCGGTC CGAGCGCGAA CTGTTCCACG CCCGCAGGGA GAAGCTGCGC
GAGGCCACCG GCTCCCTGGA TCACGAGATC CAGATGGCCA GCCGGCGGCT GAACCTGATC
CAGCCGCTGG TCGAGCGCAA GGCCGTCAGC CAGATGGAGT CGCTGCAGCT ACAGCAGGAT
ATCGCCTCGC TGCGTGGCAA GCGCGCCGAG ATCCAGAACA GCTACGTGCA GGATGCCTAC
ACCGAACTGA CGGACAAGAA GGGGGAGCTG TCGTCGCTGG AGCAGGTCCT GGTGCAGCGC
CAGGACCAGT ACCAGCGCAC CGAACTGAAC TCGCCGGTGC ATGGCCGGGT CAACGCGATC
AACTACACCA CCCGGGGTGG CGTGGTGCCC CCGGGCGAGA CCATCATGGA AGTGATCCCG
CTGGAGGACC AGCTGCTGCT CGAGGCCAAG ATCAAGCCGC AGGACGTCGC CTTCCTGGCG
CCCGGGATGC CGGCCAGCGT CAAGATCACC GCCTACGATT ACACGATCTA CGGCGATCTC
GAAGGGACGG TCGAGCAGAT CAGCGCCGAT ACCATAGAAG AGGAGACGCC CCGGGGCACG
GAGTCCTACT ACAAGGTCTA CATCCGCACC GAAAGCGGCT CGTTGACGCA CAATGGCAAG
GACCTGCCGA TCATTCCCGG CATGATCGCC CAGGTCGATA TCCAGACCGG CGAGCGCAGC
GTGCTGGACT ACCTGCTCAA GCCGCTGCTC AAGGCAAACC TCTATTGA
 
Protein sequence
MATTLSDQQL QRQLGDPRAN LRHPLARPVV WAVLVCLLSF IGWSAWAHIA VVTHGEGRVI 
PVSRIQSIQS LEGGIIDELE VREGDIVDKG QLLVKLSGTR FRSAYQETEN QVQALKAAIA
RLQAEVLEAD SIDFPADVDA QSSLARSERE LFHARREKLR EATGSLDHEI QMASRRLNLI
QPLVERKAVS QMESLQLQQD IASLRGKRAE IQNSYVQDAY TELTDKKGEL SSLEQVLVQR
QDQYQRTELN SPVHGRVNAI NYTTRGGVVP PGETIMEVIP LEDQLLLEAK IKPQDVAFLA
PGMPASVKIT AYDYTIYGDL EGTVEQISAD TIEEETPRGT ESYYKVYIRT ESGSLTHNGK
DLPIIPGMIA QVDIQTGERS VLDYLLKPLL KANLY