Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPD_4342 |
Symbol | |
ID | 4024866 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB5 |
Kingdom | Bacteria |
Replicon accession | NC_007958 |
Strand | - |
Start bp | 4804559 |
End bp | 4806478 |
Gene Length | 1920 bp |
Protein Length | 639 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 637964551 |
Product | ABC transporter, ATP-binding/permease protein |
Protein accession | YP_571460 |
Protein GI | 91978801 |
COG category | [V] Defense mechanisms |
COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
TIGRFAM ID | [TIGR02204] ABC transporter, permease/ATP-binding protein |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.180584 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACGACAG CAAGCAAACG ACAGACCTCC GGATCCAAGG CGTTGGAACC AAAGGCCTCG GCGATCGGAT TGTCGCTGGA CGCGATCGCG GCCACCGAGA ATGTCGGGCC GCGCACCGGC ACGCTCCGCG CCGACGCCGA TGTCAGCCAG GTCGAGGAAG TCGAGGCGGT CGCCAAGCGC AGCCGGCTGC GGCCGCTGCT GGCGCTGGCG CCCTATGTCG ACCATTACCG CGGCCGCGCC CTGATGGCGC TGATCGCGCT GATCGTCGCC GCGATGACGA CGCTGATGGT GCCGCTCGCA GTGCGGCGGC TGATCGATTT CGGCTTCAGC GGCGAAGGCA TCGAGCTGAT CAACAGCTAT TTCAGCGTGA TGCTCGCGGT GGTCGGCGTG CTCGCGGTCG CGAGCGCCGC GCGTTACTAC TTGGTGATGA CGATCGGCGA GCGGATCGTC GCCGATCTGC GCCGCGATGT CTTCAAGCAT CTCACCGCGC TGTCGCCGTC GTTCTTCGAC TCCGCGCGCA GCGGCGAGTT GATCTCGCGG CTGACCGCCG ACACCACGCA GATCAAGTCC GCGGTCGGCG CCTCGGTCTC GATCGCGCTG CGCAACATGC TGCTGTTCGC GGGCGCGATC ACCATGATGG TGATCTCGAG CCCGCGATTG AGCGGCATCG TGCTGGCGGC GATCCCGCTG ATCGTGATCC CGCTGGTCGC TTTCGGTCGC TGGGTGCGGC GGCTGTCGCG CAACGCGCAG GACACGCTGG CGAACGCCTC CGCCTTCGCT TCCGAGCTGG TCGGCGCGAT GCGCACGGTG CAGGCCTACA CCAACGAGCG GCTCGCCAAT GCGCGGTTCG GCGCCGAGGT CGAACAGTCC TACGAGGCGG CGCGGAGTTC GACCCAGGCG CGCGCGATCC TCACCGCGAT CATCATCTTC ATCGTGTTCG CGAGCGTGGT GGCGATCCTG TGGGTCGGCT CGCACGACGT CGCCTCCGGC ACGATCACGC CGGGCCGGCT CGGTCAGTTT ATTTTGTACG CGGCGTTCGC GGCCTCCAGC CTCGGCCAGC TCAGCGAAGT GTGGGGCGAG GTCTCGGCCG CCTCCGGCGC CGCCGAGCGG TTGTTCGAGA TCCTGCGCGT CAAGCCGGCG ATCGCGGCGC CCGCCAAGCC GCGCGCATTG CCGGTGCCGG TGCGCGGCGA CGTCACCTTC GACAATGTCT CCTTCGCCTA CCCGACGCGG CCGGATTATC TCGCGGTGAA CGGCCTGTCG TTGTCGATCA AGGCCGGCGA GAAGGTCGCG ATCGTCGGCC CCTCGGGCGC CGGCAAGAGC ACGCTGTTCC ATCTGCTGCT GCGGTTCTAC GATCCCGCCG CCGGCACCAT CTTGCTGGAT GGCGTGCCGA TCGCCTCGGC CGATCCGCAG GCGGTGCGCG AGCGCATCGC GCTGGTGCCG CAGGACTCCG TGGTGTTCGC GGCCACCGCC CGCGACAACA TCCGGTTCGG CCGCGACGAC GCGAGCGACG CCGATGTCGA GCGCGCCGCG CAGCAGGCCC ATGCCACCGA ATTCATCGAC CGGCTGCCCG GCGGCTTCGA GGCGCCGCTC GGCGAGCGCG GCGTCACGCT GTCCGGCGGC CAGCGCCAGC GCATCGCGAT CGCCCGCGCC ATCCTGCGCG ACGCGCCGCT GCTGCTGCTC GACGAGGCCA CCTCGTCGCT CGACGCCGAA AGCGAAACGC TGGTGCAGAC CGCGCTGCAG GGCCTGATGC GCGACCGCAC CACGCTGGTG ATCGCGCATC GGCTGGCGAC CGTGCTGTCC TGCGATCGCA TTCTCGTCAT GGAGAACGGC CGCATCATCG ACCAGGGCAC CCACGCCCAG CTCGTCGCCC GCGGCGGCCT CTATGCGCGG CTGGCGAAGC TGCAATTCGA GGCGGCGTAA
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Protein sequence | MTTASKRQTS GSKALEPKAS AIGLSLDAIA ATENVGPRTG TLRADADVSQ VEEVEAVAKR SRLRPLLALA PYVDHYRGRA LMALIALIVA AMTTLMVPLA VRRLIDFGFS GEGIELINSY FSVMLAVVGV LAVASAARYY LVMTIGERIV ADLRRDVFKH LTALSPSFFD SARSGELISR LTADTTQIKS AVGASVSIAL RNMLLFAGAI TMMVISSPRL SGIVLAAIPL IVIPLVAFGR WVRRLSRNAQ DTLANASAFA SELVGAMRTV QAYTNERLAN ARFGAEVEQS YEAARSSTQA RAILTAIIIF IVFASVVAIL WVGSHDVASG TITPGRLGQF ILYAAFAASS LGQLSEVWGE VSAASGAAER LFEILRVKPA IAAPAKPRAL PVPVRGDVTF DNVSFAYPTR PDYLAVNGLS LSIKAGEKVA IVGPSGAGKS TLFHLLLRFY DPAAGTILLD GVPIASADPQ AVRERIALVP QDSVVFAATA RDNIRFGRDD ASDADVERAA QQAHATEFID RLPGGFEAPL GERGVTLSGG QRQRIAIARA ILRDAPLLLL DEATSSLDAE SETLVQTALQ GLMRDRTTLV IAHRLATVLS CDRILVMENG RIIDQGTHAQ LVARGGLYAR LAKLQFEAA
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