| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_4308 |
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| Symbol | |
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| ID | 4024832 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | + |
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| Start bp | 4774824 |
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| End bp | 4776236 |
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| Gene Length | 1413 bp |
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| Protein Length | 470 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 637964517 |
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| Product | MATE efflux family protein |
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| Protein accession | YP_571426 |
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| Protein GI | 91978767 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0534] Na+-driven multidrug efflux pump |
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| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.462877 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCTCCT CGGATCTGGA TCTTGCCGCC GGCGCGCCCG CGCCGGCGAA ATCGTCTGCG
TGGCGGACTG AAATCGTCGA GACGTTGTGG CTCGCGGTGC CGATGGCGCT GACGCAGCTC
GGCCAGATCG CGATGATGAC CACCGACCTC GCGCTGATCG GCCGGCTCGG CGACGCCGCC
GTGGCCGCGG CGGCGCTTGC GCATACGGTG TGGCTGGTGG CTTTCATGCT CGGCATCGGC
CTGGCGTCGG CGGTGGCGCC GCTGGCGGCG CAGGCCTATG GCGCGCGCTC GCCGCGCAAG
GTCCGCGCCT CGTTGCGGGT CGGGCTGTGG GCGTCGCTGA TCGCCGGCGT CCCGCTGACG
CTGAGCCAGT TCTACGGCGA GGAACTGCTG CGGGCCGCCG GCCAGGACGC GCGCACCGCG
CAGCTCGCGG GCCACTATCT GCACGGGCTC GCATGGTCGC TGGTGCCGGG CTGGATGTTC
ATCGCATTCC GCAGCTTCAT GGGCGCGGTC AACCGCCCGG AGCCGGCGCT GTGGATCATG
TTCGCCGCGG TGCCGATCAA CGCCGTGCTC GCTTACGCGC TGATCCATGG CGAGTTCGGC
CTGCCGGCCC TCGGCATCCT CGGCGCCGGC CTCGCCACCG CGCTGGTGTC GATGGGGAAC
TGCGTCGCCG CGGCCGTGGT GTGCGTCAGC ATGCAGCCGT TCCGCAAATA TCGGGTGTTC
GGCCAGTTGT GGCGGCTGGA TGCGCCGCTG ATGAAACGGC TGCTCGGCCT CGGCCTGCCG
ATCTCGGGCG CCTCGGTGCT CGAATATGGG CTGTTCGGCG CCGCCGCACT GCTGATGGGC
CAGATCAGCA CCACCGCGCT GGCCGCGCAT CAGATCGCGC TGCAGGTGGC GGCGATCATG
TTCATGGTGC CGATGGGCAT CTCGCTCGCC GCGACCGTGC GGGTCGGCCA TGCGGTCGGC
CGCCACGATC CGGCCGGCGC ACGGCGGGCC GGCTTTGCCG CGATCGGGCT CGGCCTCGCC
TTCATGGCCT TGATGACGCT GCTGGTGGCG CTGACGCGGT ACGACATTCC GCAGCTGTTC
CTCGGCGACA CCGTGACCGC CGCAGAGACC GCGCAACTCA CCGCCTCGCT GCTGGTGGTG
GGCGCCAGCT TCTTCATGGC GGACGGCCTG CAGGTGGTCG CCAACGGCGC GCTGCGCGGC
CGCAACGACA CCCGCATCCC GCTGCTGTTC GCGGCGCTCA GCTTCTGGGC GATCGGTTTT
CCGTGCAGCT ACCTGCTGGC TTTTCCCGCC GGCTTCGGAC CGTTCGGCGT CTGGATCGGG
CTGGCGATCG GGCTCACGGT CTATGCCGCG CTGCTGGTGT GGCGATTCCA TCTGCTGACG
CGCCAGCCGC TGCCGGGCCT GGCGCGCGGG TAA
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| Protein sequence | MTSSDLDLAA GAPAPAKSSA WRTEIVETLW LAVPMALTQL GQIAMMTTDL ALIGRLGDAA
VAAAALAHTV WLVAFMLGIG LASAVAPLAA QAYGARSPRK VRASLRVGLW ASLIAGVPLT
LSQFYGEELL RAAGQDARTA QLAGHYLHGL AWSLVPGWMF IAFRSFMGAV NRPEPALWIM
FAAVPINAVL AYALIHGEFG LPALGILGAG LATALVSMGN CVAAAVVCVS MQPFRKYRVF
GQLWRLDAPL MKRLLGLGLP ISGASVLEYG LFGAAALLMG QISTTALAAH QIALQVAAIM
FMVPMGISLA ATVRVGHAVG RHDPAGARRA GFAAIGLGLA FMALMTLLVA LTRYDIPQLF
LGDTVTAAET AQLTASLLVV GASFFMADGL QVVANGALRG RNDTRIPLLF AALSFWAIGF
PCSYLLAFPA GFGPFGVWIG LAIGLTVYAA LLVWRFHLLT RQPLPGLARG
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