Gene RPD_4219 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPD_4219 
Symbol 
ID4024740 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB5 
KingdomBacteria 
Replicon accessionNC_007958 
Strand
Start bp4684794 
End bp4685483 
Gene Length690 bp 
Protein Length229 aa 
Translation table11 
GC content64% 
IMG OID637964425 
ProductOmpW 
Protein accessionYP_571337 
Protein GI91978678 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG3047] Outer membrane protein W 
TIGRFAM ID[TIGR03304] outer membrane insertion C-terminal signal 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.922392 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCAAGT TTCTGACTGT CGTGTCGGCG CTGGGGATGG CGGCGGCATT GAACGGCCTG 
CCGGCCAACG CCGTCGCCGC CGATCTCGCC GCCCGCCCGG TGTACAAGGC GCCGGTGGTG
GACGAATGGA ATCCGTGGAT GATCCGCCTG CGCGTGCTTG GCGTGGTCCC GCGGGATTCC
GGTTACGTCG ACCAGATCGC CGGCTCGTCG CTGAAGACCT CGGATGCGCT GGTGCCCGAA
CTCGACATTT CGTACTTCTT CAACAGGAAC ATCGCCGCCG AACTGATCCT CGGCGTCACC
CGGCACAGCG TCTCGGGCGC GGGCACGCTC ACCGGGATCG ACGTCGGCAA GTCGTGGCTG
CTGCCGCCGA CGCTGACGCT GCAATATCAC TTCACCGAGT TCGGCGCGTT CAAGCCCTAT
ATCGGCGCCG GCGTGAACTA CACGTTCTTC TTCAGCCAGA GCGCGGCGGG CGGCGTCGTC
ACCGACAGCC ACCTCAAGGA CAGCTTCGCC CCGGTGGCGC AGATCGGCTT CGACTACATG
TTCGACAAGC ATTGGGGCTG GAACGTCGAC GTCAAGAAGA TCTGGTTGCG TCCGGAGTGG
AACGGCACGC TGGCCGGCAA CGTGCCGGTG ACCGGCAAGG TCAATCTCGA TCCGTGGCTG
ATCGGCACCG GCATCACCTA CAAGTTCTGA
 
Protein sequence
MTKFLTVVSA LGMAAALNGL PANAVAADLA ARPVYKAPVV DEWNPWMIRL RVLGVVPRDS 
GYVDQIAGSS LKTSDALVPE LDISYFFNRN IAAELILGVT RHSVSGAGTL TGIDVGKSWL
LPPTLTLQYH FTEFGAFKPY IGAGVNYTFF FSQSAAGGVV TDSHLKDSFA PVAQIGFDYM
FDKHWGWNVD VKKIWLRPEW NGTLAGNVPV TGKVNLDPWL IGTGITYKF