| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_4063 |
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| Symbol | |
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| ID | 4024580 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | - |
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| Start bp | 4515295 |
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| End bp | 4517094 |
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| Gene Length | 1800 bp |
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| Protein Length | 599 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637964266 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_571183 |
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| Protein GI | 91978524 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.159076 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.524387 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGAGACT TGACTAGACG GAAGACCCAG CCCCGCCGGC TGCGGCTGAT GACGATGGCG
AGCGCCGCCG CGCTGATGGC GGCGTCGATG ACGCTGGCGG CGCCGGCGTG GGCCGCCGAT
GAGGCGGCGC TGAAGAAATG GATCGACGAG GAGTTTCAAC CTTCGACGTT GTCGAAGGAG
GAGCAGCTCA AGGAATTGCA GTGGTTCGCA AAGGCGGCCG AGCCGTTCAA GGGGATGGAT
ATCAACGTCG TCTCCGAGAC GATCACCACG CACGAATACG AAGCCAAGAC GCTCGCCAAG
GCGTTCTCCG AGATCACCGG CATCAAGCTG AAGCACGATC TGATCCAGGA AGGCGACGTC
GTCGAGAAGC TGCAGACCCA GATGCAGTCC GGCAAGAACG TCTATGACGG CTGGATCAAC
GATTCGGACC TGATCGGCAC GCATTTCCGC TACGGCCAGG CCATCGCGCT GTCGGACTAC
ATGGCCGGCG AGGGCAAGGC CGTCACTCTG CCGACCCTCG ACATCGAGGA CTTTATCGGC
CGGTCGTTCA CCACGGCGCC CGACAAGAAG ATGTACCAAC TGCCGGACCA GCAGTTCGCG
AACCTTTACT GGTTCCGGTA CGACTGGTTC ACCAACGCGG ACTACAAGGC CAGGTTCAAG
GCGAAATACG GCTATGAGCT GGGCGTGCCG GTGAACTGGT CGGCCTATGA GGACATCGCG
GAATTCTTCA CCAACGACGT CAAGGAGATC GACGGCGTCA AGGTCTATGG CCACATGGAC
TACGGCAAGA AGGACCCGTC GCTCGGCTGG CGCTTCACCG ACGCCTGGCT GTCGATGGCC
GGCAATGGCG ACAAGGGCCT CCCGAACGGC CGGCCGGTCG ACGAATGGGG CGTCCGGATG
GAAGGCTGCC GTCCGGTCGG CTCCTCGGTG GAGCGCGGCG GCGACACCAA CGGTCCCGCA
TCGGTCTATT CGATCGTGAA GTATCTCGAC TGGATGAAGA AGTATGCCCC GCCGCAGGCG
CAGGGCATGA CCTTCTCCGA GTCGGGCCCG GTGCCGGCGC AGGGCAACGT CGCCCAGCAG
ATGTTCTGGT ACACCGCCTT CACCGCCGAC ATGGTGAAGC CCGGGCTGCC GGTGGTGAAC
GCCGACGGCA CGCCGAAGTG GCGGATGGCG CCTTCGCCGA AGGGCGCCTA TTGGAAGGAA
GGCATGAAGC TCGGCTATCA GGACGTCGGT TCCGGCACGC TCTTGAAGTC GACCCCGGCG
GATCGCCGCA AGGCGGCGTG GCTGTATCTG CAGTTCATCA CCTCGAAGAC GGTGAGCCTG
AAGAAGAGCC ATGTCGGTCT CACCTTCATC CGTGAGAGCG ATATCTGGGA CAAGTCGTTT
ACGGAACGCG CACCGAAGCT CGGTGGTCTG ATCGAGTTCT ATCGCTCGCC GGCCCGCGTG
CAATGGTCGC CGACCGGCAA CAACATCCCG GACTATCCGA AGCTGGCGCA GCTTTGGTGG
CAGAACATCG GCGATGCCTC CTCCGGCGCC AAGACCGCGC AGGCGGCGAT GGACTCGCTG
GCGGCGGCGC AGGACTCGGT GCTCGAACGC CTCGAGAAGT CGAAGGTGCA GGGCGACTGC
GGTCCGAAGC TGAACAAGAA GGAGACCGCC GAGTACTGGT ACGCGAAGTC GGAAAAGGAC
GGCAACATCG CTCCGCAGCG CAAGCTCGCC AACGAAAAGC CGAAGGGTGA AACCGTCGAC
TACGACACCC TGATCAAGTC CTGGCCGGCC TCGCCACCGA AGCGCGCCGA AGCGAAGTAA
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| Protein sequence | MRDLTRRKTQ PRRLRLMTMA SAAALMAASM TLAAPAWAAD EAALKKWIDE EFQPSTLSKE
EQLKELQWFA KAAEPFKGMD INVVSETITT HEYEAKTLAK AFSEITGIKL KHDLIQEGDV
VEKLQTQMQS GKNVYDGWIN DSDLIGTHFR YGQAIALSDY MAGEGKAVTL PTLDIEDFIG
RSFTTAPDKK MYQLPDQQFA NLYWFRYDWF TNADYKARFK AKYGYELGVP VNWSAYEDIA
EFFTNDVKEI DGVKVYGHMD YGKKDPSLGW RFTDAWLSMA GNGDKGLPNG RPVDEWGVRM
EGCRPVGSSV ERGGDTNGPA SVYSIVKYLD WMKKYAPPQA QGMTFSESGP VPAQGNVAQQ
MFWYTAFTAD MVKPGLPVVN ADGTPKWRMA PSPKGAYWKE GMKLGYQDVG SGTLLKSTPA
DRRKAAWLYL QFITSKTVSL KKSHVGLTFI RESDIWDKSF TERAPKLGGL IEFYRSPARV
QWSPTGNNIP DYPKLAQLWW QNIGDASSGA KTAQAAMDSL AAAQDSVLER LEKSKVQGDC
GPKLNKKETA EYWYAKSEKD GNIAPQRKLA NEKPKGETVD YDTLIKSWPA SPPKRAEAK
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