Gene RPD_3984 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPD_3984 
Symbol 
ID4024501 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB5 
KingdomBacteria 
Replicon accessionNC_007958 
Strand
Start bp4430991 
End bp4432598 
Gene Length1608 bp 
Protein Length535 aa 
Translation table11 
GC content66% 
IMG OID637964187 
ProductAMP-dependent synthetase and ligase 
Protein accessionYP_571104 
Protein GI91978445 
COG category[I] Lipid transport and metabolism 
COG ID[COG0365] Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTCACCG AAACCTCCGA CTACGATAGC CTCTACCGCG ATTTCCGTTG GTCGGTTCCC 
GCCCGCTTCA ACATCGCGAC CGCGGCGTGC GATCGGCACG CGATCGGCGA CAAGCCGGCG
CTGATCTATG TCGACGAAGC CGGCGCGGTC ACGCGGATGT CGTTCGCCGA GATCGCCAGC
GCCTCGCGCC GCTTCGCCAA TGTGCTGAAG GCCGCCGGCC TCGCGCGCGG CGACCGCGTC
GCGGTGTTCC TGTCGCAATC GATCGAGCTG CCGATCGCGC ATCTCGCGGC GTTCCGTTCG
GGGCTCGTCT CGGTGCCGTT GTTCACGCTG TTCGGCGAGG ACGCGCTGGA GTTTCGTCTG
TCGAATTCCG GCGCCCGCGC GGTGATCACC GATGAGAGCG GGCTGCCGAA GCTGCTCAGG
ATCCGCGACC GCCTGCCGGA GTTGCGGCAG ATCTACGTCA CCGGAGGCGC GGCGCCGTCC
GGCGTCGAGC TGTTCTGGTC CAAGCTCGAT GCGGCGTCCG ATGCGTTCGA GACGGTCGAC
ACCTCCTGCG ACGATCCCGC GATCATCATC TACACCTCGG GCACGACCGG TAACCCGAAA
GGCGCGCTGC ACGCCCATCG CGTGCTGCTC GGCCATCTGC CGAATGTCGA GATGGCGCAC
GACTTCTTTC CGAGGCCCGG CGACCTGATG TGGACGCCGG CGGATTGGGC GTGGATCGGC
GGATTGTTCG ATGCGCTGTT TCCGGCCTGG TATCACGGCG TCGCGATGCT CGGCCACCGC
GCCAGAAAGT TCGAGCCGCA GGCCGCGATG CAGCTGATGG CCGATCACGG CGTCCGCAAC
GTGTTCCTGC CGCCGACCGC GCTGAAGCTG ATGCGGCAGG CGGATGTGAA ACATCCCGGC
GTCAAGTTGC GCAGCATCTT CACCGGCGGC GAGTCGCTCG GCGGCGAATT GCTGGCCTGG
GTGCGCGCCA CTTTCGGCGT CGATGCGCAC GAGATCTACG GCCAGACCGA ATGCAATCTG
GTGGTCGGCA ACAACGCAAG GCTGTTTCCG ATCCGTCCCG GCTCGATGGG CAAGGCGACG
CCGGGTTTCG ATGTCCGCAT CGTCGATGAA GACGGCCGGG AACTGCCGTG CGGCGAGCGC
GGCATCATCG GCGTGCGCCA GCCCAATCCC TGCACCATGC TGGAATATTG GAAGAACCCG
GAGGCGACCG CGAAGAAATT CGCAGGCGGC TTCCTGCTCA CCGGAGATCT GGCCAGGCAG
GACGGCGACG GTTACTTCTG GTACGACAGC CGCGAGGACG ATGTCATCAC CTCGGCCGGC
TATCGCATCG GCCCGTCGGA GATCGAGCAC ACGCTGCTGA AGCATCCGGC GGTGGCGTTC
GCCGCGGTGG TCGGCGTGCC CGATCCGATC CGCACCGAAG CGATCAAGGC CTGGATCGTT
CTGCGCCCGG GCTTCGCCAA GGGCGACGCG TTGGCGCGCG AGATCCAGAA TTTCGTCAAG
GTCCAGCTTG CCGCCCACGA ATATCCCCGC CACGTCGAAT TCACCGAGAC GTTGCCGATG
ACCGCGACCG GCAAGGTGCT GCGCCGCGAG CTGCGGGCGA AGGGGTAG
 
Protein sequence
MLTETSDYDS LYRDFRWSVP ARFNIATAAC DRHAIGDKPA LIYVDEAGAV TRMSFAEIAS 
ASRRFANVLK AAGLARGDRV AVFLSQSIEL PIAHLAAFRS GLVSVPLFTL FGEDALEFRL
SNSGARAVIT DESGLPKLLR IRDRLPELRQ IYVTGGAAPS GVELFWSKLD AASDAFETVD
TSCDDPAIII YTSGTTGNPK GALHAHRVLL GHLPNVEMAH DFFPRPGDLM WTPADWAWIG
GLFDALFPAW YHGVAMLGHR ARKFEPQAAM QLMADHGVRN VFLPPTALKL MRQADVKHPG
VKLRSIFTGG ESLGGELLAW VRATFGVDAH EIYGQTECNL VVGNNARLFP IRPGSMGKAT
PGFDVRIVDE DGRELPCGER GIIGVRQPNP CTMLEYWKNP EATAKKFAGG FLLTGDLARQ
DGDGYFWYDS REDDVITSAG YRIGPSEIEH TLLKHPAVAF AAVVGVPDPI RTEAIKAWIV
LRPGFAKGDA LAREIQNFVK VQLAAHEYPR HVEFTETLPM TATGKVLRRE LRAKG