Gene RPD_3961 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPD_3961 
Symbol 
ID4024478 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB5 
KingdomBacteria 
Replicon accessionNC_007958 
Strand
Start bp4408508 
End bp4409146 
Gene Length639 bp 
Protein Length212 aa 
Translation table11 
GC content67% 
IMG OID637964164 
Productphosphatidylethanolamine N-methyltransferase 
Protein accessionYP_571081 
Protein GI91978422 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG2226] Methylase involved in ubiquinone/menaquinone biosynthesis 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGGGAACG ATATCGATCG CGCAGGCGTC GCGAAAGCCT ACGCACGCTG GGCGCCGATC 
TACGACATGG TGTTCGGCAA GGTGTTCGAC AGCGGCCGGC AATCGACCAT CGCCATGGCG
GATGCGATCG GCGGGCGCGT GCTGGATGTC GGCGTCGGCA CCGGCCTGTC GCTGTCGGAC
TACTCGCCGA CGACGCGGCT GTGCGGTGTC GACATCTCCG AGCCGATGCT GCGCCGGGCG
CATGAGCGCG TCCGCACGCT GAACCTGACC AATGTCGAGA CGCTGGCGGT GATGGATGCC
AAGAATCTGG CGTTTCCGAA CGGCTTCTTC GACGCGGTCG TGGCGCAATA CGTCATCACG
GCGGTGCCGG ACCCGGAAGC CACGCTGGAC GATTTCGTTC GGGTGCTCAG GCCGGGCGGC
GAACTGATCC TGGTCAACCA CATCGGCGCC GAGAGCGGGC CGCGCAAGCT GTTCGAACTG
GCGTTCTCGC CGCTCGCGCG GCGGCTCGGC TGGCGTCCGG AGTTTCCATG GGCGCGGCTG
GTGAACTGGG CTGCGCGGCA TGGCGGCGTG GAACTCGCCG AGCGACGGCC GATGCCGCCG
ATGGGGCATT TTTCGCTGAT CCGCTACCGC AAGCTCTGA
 
Protein sequence
MGNDIDRAGV AKAYARWAPI YDMVFGKVFD SGRQSTIAMA DAIGGRVLDV GVGTGLSLSD 
YSPTTRLCGV DISEPMLRRA HERVRTLNLT NVETLAVMDA KNLAFPNGFF DAVVAQYVIT
AVPDPEATLD DFVRVLRPGG ELILVNHIGA ESGPRKLFEL AFSPLARRLG WRPEFPWARL
VNWAARHGGV ELAERRPMPP MGHFSLIRYR KL