Gene RPD_3853 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPD_3853 
Symbol 
ID4024369 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB5 
KingdomBacteria 
Replicon accessionNC_007958 
Strand
Start bp4292094 
End bp4292756 
Gene Length663 bp 
Protein Length220 aa 
Translation table11 
GC content64% 
IMG OID637964057 
Producthypothetical protein 
Protein accessionYP_570975 
Protein GI91978316 
COG category[C] Energy production and conversion 
COG ID[COG4237] Hydrogenase 4 membrane component (E) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.395736 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCACGGTC TCGCCTTCGA CATTTCGCAT TCGCTGGCCG GCGGTTTGGT GCTGGTATCG 
TTCATGATGC TGTATCAGGA CCGGCTGACT TCGCTGCTCA ACGTGTTTGC GCTGCATGCG
GTCATGCTGT CGCTGGCGGT GGGATGGCAG GCGCTGATCC AGGACGCGCC GCATCTCTAC
GTCACCGCGC TGATCGCGCT GCTGTTCAAG GCGATCATCA TTCCGGTCGC GCTGCGCCGC
ATCGTCTACA AGCTCGGCAT CCACCGCGAC ATCGAGACCG TGGTGGGGAT CGGCCCGACC
ATGCTGGCCG GGATGGGGCT GGTGGCGCTG TCGCTGGCGC TGATGCTGCG TGTCACCGCC
GACGCTGATG CGCTGGCGCG CGAGGATCTT GCGTTTGCGC TCTCCGTCGT ACTGCTCGGC
CTGCTGTTCA TGGTGACGCG GCGCAACGCG GTCAGCCAGG TCATCGGCTT CATGTCGCTG
GAAAACGGGT TGATCCTGGC TGCTGCCGGC GCCAAGGGCA TGCCGCTGGT GGTCGAGATC
AGCGTCGCCT TCTCGGTGCT GATTGCGTTC ATCGTCATCG GCATCGTGCT GTTCCGGATC
CGCGAACGGT TCGACTCGGT CGACGTTTCG CAGCTCGACG TCTCGCGTGG GGAGCAGCGA
TGA
 
Protein sequence
MHGLAFDISH SLAGGLVLVS FMMLYQDRLT SLLNVFALHA VMLSLAVGWQ ALIQDAPHLY 
VTALIALLFK AIIIPVALRR IVYKLGIHRD IETVVGIGPT MLAGMGLVAL SLALMLRVTA
DADALAREDL AFALSVVLLG LLFMVTRRNA VSQVIGFMSL ENGLILAAAG AKGMPLVVEI
SVAFSVLIAF IVIGIVLFRI RERFDSVDVS QLDVSRGEQR