| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_3781 |
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| Symbol | |
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| ID | 4024297 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | - |
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| Start bp | 4220922 |
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| End bp | 4222118 |
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| Gene Length | 1197 bp |
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| Protein Length | 398 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637963985 |
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| Product | secretion protein HlyD |
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| Protein accession | YP_570903 |
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| Protein GI | 91978244 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.012367 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGGGGAT CGACCGGTTT TGCCTTCACG GCGATGACGC TTGCGTGTCT TGCGCTGGTG
TTGGGCGGCT GCAACGATTC AAAGGTGGCG AACGCCGCCA CCACGGAAAA ACCCGAAGTC
AGCGTCATCA CCGTCAAGGC GCATGCAAGG TCGATCGTTC GCGAACTGCC GGGCCGCATT
GCCCCGATCC GGGTCGCCGA CGTGCGTCCG CGTGTGTCCG GCATCGTCGT GCAGCGCCCG
TTCCAGCAGG GCAGCGAGGT CGCAGCGGGC GATCCGCTGT ACAAGATCGA TCCGCGCCCG
TTCGAAGTCG AGTTGAAGGC GGCTGAAGCA GCGCTGGCCA AGGCGCATGC CGCGCGCGAG
CAGGCGACGC TGCAAGCCAA GCGGGTCGCG ATGCTGGCGA ACGAGCAGGC GGCCTCGAAG
GCACAAAACG AAGTCGCGGC GAGCAATTCG CGGCAGGCCG AGGCCGAGGT CGCGGCCCGC
GAGGCCGATG TCGCCCGCGC CAGGCTCAAT CTGGAATACG CGACCATTCG GGCGCCGATC
AGCGGTCGAA TCGGCGCGGC ACTGGTCAGC GAGGGCGCGC TGGTGGTACA GAACGAGCAG
AACAGCCTCG CCACCATCCA GCAACTCGAC CGCGTCTATG CCGACTTCAC CCAGCCGGTC
GCCGAAATGG TCCGTCTGCG CCGCGCGTTC GAATCCGGAG AGCTCGACCA GATCGCGCCG
GATGCGGCGC GCGCCCGGCT CGTGCTCGAT GATGGCACGT TGTATCCGCT GCCGGGCAAG
CTGCTGTTCT CCGAAGCTAA GGTCGATGCC TACACCGGAC AGGTGACGCT GCGCGCCGAG
TTTGAAAATC CGAACCGTGA GCTGCTGCCC GGGATGTATG TCCGCGTCCG GATCGAGCAG
GGATACGACC CGGACGCCAT CTCGGTTCCT GAACAGGCGA TTCAGCGCAA TGGCGGCGGC
GGCAGCGAGG TCTTCGTGGT CAAGGACGAC AACCGCGTCG CGGTGCAGCC GGTGCGGGTC
GGCTCCCAGC AGGACGGTCA ATGGTTGGTG CTCGACGGCC TGAAGCCCGG CGCGCAAGTC
GTGGTCGAAG GGTTCCAGAA GTTCGCGGCC GGTGATGCGG TCACTCCGGT GAATGCGGAT
GAACCCAAGG CGGCGACCGT GCACCATACG GCGGGCAGCC CGAAGAAGGT GCAATAG
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| Protein sequence | MRGSTGFAFT AMTLACLALV LGGCNDSKVA NAATTEKPEV SVITVKAHAR SIVRELPGRI
APIRVADVRP RVSGIVVQRP FQQGSEVAAG DPLYKIDPRP FEVELKAAEA ALAKAHAARE
QATLQAKRVA MLANEQAASK AQNEVAASNS RQAEAEVAAR EADVARARLN LEYATIRAPI
SGRIGAALVS EGALVVQNEQ NSLATIQQLD RVYADFTQPV AEMVRLRRAF ESGELDQIAP
DAARARLVLD DGTLYPLPGK LLFSEAKVDA YTGQVTLRAE FENPNRELLP GMYVRVRIEQ
GYDPDAISVP EQAIQRNGGG GSEVFVVKDD NRVAVQPVRV GSQQDGQWLV LDGLKPGAQV
VVEGFQKFAA GDAVTPVNAD EPKAATVHHT AGSPKKVQ
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