| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_3701 |
|---|
| Symbol | |
|---|
| ID | 4024217 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | - |
|---|
| Start bp | 4130098 |
|---|
| End bp | 4130796 |
|---|
| Gene Length | 699 bp |
|---|
| Protein Length | 232 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637963905 |
|---|
| Product | Hly-III related proteins |
|---|
| Protein accession | YP_570823 |
|---|
| Protein GI | 91978164 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1272] Predicted membrane protein, hemolysin III homolog |
|---|
| TIGRFAM ID | [TIGR01065] channel protein, hemolysin III family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGATCT TTCGGATGAA GCAAATCGAT TCGCATTCCA GGATCGACTC CAGGGGATCG
GTTCACTGGA ATTACGATCG CGCCGAGCTG ATTGCGGATG GCGTGGTCCA TGTGCTGGGC
CTCGTCGCCG GCCTGATCGC CGTGACCGCG CTGATCACGC TGACCGGGGT GTTTGCGGAT
ACGTCCACAT TCGTCTCGGT AACAGTATAT GCCGCCGGCC TGCTGGCTAT GCTGGGTTTG
TCGGCGGCGT ATAATCTGTG GCCGGTGTCG CCGCGCAAAT GGCTGCTGCG GCGGTTCGAC
CATTCCGCGA TCTACATCCT GATCGCCGCA ACCTACACAC CGATTATCAG CCAGATCAAG
GACCAGATGT TCGCGCTGGC GCTGCTCGCC GGCGTCTGGG GCGTGGCGTT GGTCGGCATT
CTGCTGAAGC TGTTCAAGCC CGGCAAGTTC GACAAGCTGT CGGTCGGGCT GTATCTGGCG
ATGGGCTGGA GTGGCTTGAT CGCCTATGAG CATGTCATCG AAACGCTGCC AAATCTGGCG
ATGTGGTTCC TCGCCGCCGG CGGCGCGCTG TACACGCTCG GCGTGATCTT CCACGCTTGG
CGCCGGCTGC GATTCCAGAA CGCGATCTGG CACAGCTTCG TGCTGATCGC CGCCGCCTGC
CACTATGTGG CGGTGATGGA CCTGGTGCTG GCCGCCTAG
|
|---|
| Protein sequence | MTIFRMKQID SHSRIDSRGS VHWNYDRAEL IADGVVHVLG LVAGLIAVTA LITLTGVFAD
TSTFVSVTVY AAGLLAMLGL SAAYNLWPVS PRKWLLRRFD HSAIYILIAA TYTPIISQIK
DQMFALALLA GVWGVALVGI LLKLFKPGKF DKLSVGLYLA MGWSGLIAYE HVIETLPNLA
MWFLAAGGAL YTLGVIFHAW RRLRFQNAIW HSFVLIAAAC HYVAVMDLVL AA
|
|---|
| |