| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_3648 |
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| Symbol | |
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| ID | 4024162 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | - |
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| Start bp | 4072779 |
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| End bp | 4074053 |
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| Gene Length | 1275 bp |
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| Protein Length | 424 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637963852 |
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| Product | outer membrane efflux protein |
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| Protein accession | YP_570772 |
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| Protein GI | 91978113 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.856557 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCATAA GAAGCGTCGC CACGCTGTTC GCGTGCGCAT CGGCACTGCT GGTCAGCCCT
TGGCTGACGA GCGTGTCCCA TTCGCAGACC ATCACGTTGC AGACCGCCCT CCAGCGCGCG
CTGGCCACCA GTCCGCGCCT GACGGCCGCC GAACGCGACG TCGGCATCGC GTCCGGCCAG
CGGATCCAGG CCGGCGCGCT GATCAATCCG GAGGTCTCCT ACGAACAGGA CAATTCCTTC
GGATCGCGGT CGTATCGCGG AACGCGGTCG GCGGAAACGA CGCTGCAGAT CAGCCAGCTT
TTCGAGCTTT TCGGCAAGCG CGACGCGCGC ATTGCGGCGG GCCAGGCGGG CGTGGAGACG
GCCACGATCC AGCGCAAGGC GATTCGCCTG GAAGTGCTGG CGGAGACCGC CGGTGCCTTC
CTCAACGTGC TGGGCGCGCA GCGCCGGATT CAGATCCTCG ACGAGCAGAT CGCCGAGATC
GACCGCATCA CGCCGTTGCT GCAGCGGCGG GTCGACGCAG GCGCCTCGTC GTTGGCCGAA
ACCGGACGCG CGGAAGTGGC TTCGGCCCTT GTGAAGGCCG ACCGGGAGCG CGTCCGATCG
CTTCTCGCGA CTTCGAGACG CGAGCTGGCC GTGCTGATGG GCGACACCGC GCCGAAGTTT
ACGGCCGTGT CCGGACGCCT CGACGCCACC GGGCGCCCGC CATCCTTCAA CGCCGTGATC
GCGGCGATCG ATGCGAACCC CCAGTTGATG CGCTGGACCG CCGTCTACGC GCAGCGCAAC
GCGGAGCTTC TAATCGCCCG GCTGCGTCCC TATCCGGACG TCCGGGTCAA CGCAGGCTGG
CGGCACTTCA ACGATACCGG CGACGACGCC GTCCGTCTCG GCGTCACAGT CGCCATCCCG
GTCTTCGACC AGAACCAAGG CAACATCCTT TCTGCGCAGG AGAGCCTTGC AAAGACCCGT
GCTGAGCGTG AGGCCAATCG CAACTCGTTG ATCGTGTTGG CCGGGCGGGC TTACGACACC
TTGCAGGGTT CGCTGCGCGA ACTGGCCATC CTCAGGGAAA CCGCCATCCC GAAATCGCGC
CAGGCATCCG ATGCGATCTT CGAGGGGTAC GGCCAAGGCC GCTTCTCACT GCTTGAGGTC
CTCGATGCTC AGGCCAGCGT CGCCCAGGCA CGCCTGCGCG AGCAGGAGGC CCAGCAGAAC
TTCCACGTCG CCGTCGCCAT CATCGAGGGG CTCGTCGGCA ATCCATTCGC ACTGGCGCGG
GAGAGCGCAC GATGA
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| Protein sequence | MSIRSVATLF ACASALLVSP WLTSVSHSQT ITLQTALQRA LATSPRLTAA ERDVGIASGQ
RIQAGALINP EVSYEQDNSF GSRSYRGTRS AETTLQISQL FELFGKRDAR IAAGQAGVET
ATIQRKAIRL EVLAETAGAF LNVLGAQRRI QILDEQIAEI DRITPLLQRR VDAGASSLAE
TGRAEVASAL VKADRERVRS LLATSRRELA VLMGDTAPKF TAVSGRLDAT GRPPSFNAVI
AAIDANPQLM RWTAVYAQRN AELLIARLRP YPDVRVNAGW RHFNDTGDDA VRLGVTVAIP
VFDQNQGNIL SAQESLAKTR AEREANRNSL IVLAGRAYDT LQGSLRELAI LRETAIPKSR
QASDAIFEGY GQGRFSLLEV LDAQASVAQA RLREQEAQQN FHVAVAIIEG LVGNPFALAR
ESAR
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