| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_3617 |
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| Symbol | |
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| ID | 4024131 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | - |
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| Start bp | 4031300 |
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| End bp | 4033315 |
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| Gene Length | 2016 bp |
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| Protein Length | 671 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 637963821 |
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| Product | autotransporter beta-domain-containing protein |
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| Protein accession | YP_570741 |
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| Protein GI | 91978082 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2365] Protein tyrosine/serine phosphatase |
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| TIGRFAM ID | [TIGR01414] outer membrane autotransporter barrel domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAGCGCA TGACTCTTGC CCCGTCCAGG CGGATCGCGA TGCTGTGGAG CGCCGCGCTG
GCGCTGAGCG CGTCGGCTTC GCCGGCCTTG GCGCAGCAGG CGATCACGAC GCCGATTCTG
GCCACCGATC AGAATTTCCG TGACCTCGCC GGAATTTCCG AGAACGCCGG CGGCAGCGGC
TTCGTCGATC CGACCACGCA TGGCGGCGCG ATGCGGACCG GCGTGTTCTA TCGCTCCGAG
GCGTTGACGA CGCTGTCCAC GACCGATTGG CGCACGCTGT CGTCGCTTCG GATCGGACTC
GACGTCGATC TGCGGACTCC GTCGGAGATC GACGGGCCGA CCAGCATCAC GGCTCCGAAT
GCCGGTCACG ATTGGTTGCC GGCCGGAGCG CGTTACATCA ACGTCAACAT CTACGGAACC
GACGCGCCGC CTTCGAGCGC GTCGGTCGCG ACTCCTGGCG AAGCGTCGGC CTATCTGATC
GCGACCTATC AGAATTTTGT CAGCGACGCG ACGCAGCGCG GAGGCTTCCG CTCGGCGTTG
CTCGCGCTCG CCAACGAGCC CTCGGCTGCG CTGTTCCATT GCGCCGCGGG CAAGGATCGC
ACCGGTTGGA CTTCGATGCT GCTGCAGAGC ATCGCCGGAG TCGCGCCCGA GACCATTCTG
ACGGCCTATC TCGCCTCGAA TATCTATATG GCGGAGTCGA TCAGCGCCGC TCTGGCGCAG
ATCCGTGCGG CGGTCGGCAA CGGTCCCGCG GGTGATCTGG CGGTGGCGAC TGCGGCGACG
ATGCTCGGCG TGCAGGAGAG CTATCTCCAT GCCGGGCTTG CGCAGATCGT CGCGCAATAC
GGATCGATGC AGGCGTATCT GATACAAGGC CTCGGGCTCA CCCAGGCCGA CATCTACGTG
CTGCGCGCCA AGATGGTGTA CTTCGCGAAC CTGCCGGGGC AGGACGGTAT GACCGGCAAC
GCGGCGTCCG GCGCCACACT GCTCAATGCG CTGCAGAACT CGCCGCTGTC GGGCCGCTAC
ACCGCCTTCA ATTATTATCT TCAGTCGGCG GTCGACGCAG GCACGCTCGG CGGCGTCGAG
AGCCTGGTCG GCGGGCAACT CCATGCCGAC ACGGTCGCCT TCCTGGCGCG CCAGCCGTTG
TGGATCGACG CCGCGTTGGC GCCCAACGCC AGCGGTCGCG ACCTCGGCGT CGGCGAGACC
AAAGCTTGGC TGGCCGGCGT CGGCGGTTAC TTCAGCTCCG ATGGCGGAAG CGGGGTGTCG
CGGAGCATCG AACGAAGCGG TGGGCCGCTG GCCGGCGTCA CCTGGCGGAT CGATGCGCAG
AGCAGCGCCT TTGTCGGCGT CGGTTACAAT GCGGGTTCGG TCAGCAGCGC CGGCGGCAGG
GCCGATCTCG ACACCATGCT GGCGACCTTC GGCGGCCGCT ACGGGCTCTC CAGCCTCGAC
GCCGGCCCGT TTGCAGAGGC GCGGGCCAGC GTCGGCTGGT TCACCTATCA CAGCAGCCGA
ATCCTCGGCG GCGGTCTCGG CGGAACCAGC GGCGATGCGT CGGGCGGCGT CGTCAGCGGC
CGCGCCGATA TCGGCAGCGT GATCCGAGCT GCGCAGTGGA CGTTCACCCC GCAGCTCGGC
CTGCGCGCCA CCCGCGTCGG GCTCGGCCGT ATCGAGGAGC GCGGCAGCGA GTTGGCGCTC
GCGGTGGATC GCATCGGCTA CACGGCGACG AGCGCGATCG CCGGGCTCGA CGTCGCGCTC
GATCCGCGTC AGGTCTATGG CTGGCAGATC GCGCCGTCTC TCTCGCTCGG CTACGAACGC
GCGCTGTCGA ACCCGAGCGT CGAAACCACC GCCGCGCTTT ACGGCTACAC CGTGAGCCAG
GTCTCGGCCT ATGACAGCCG CAACCTCGTC AGGGCCGGCT TCGCCATTGC GGCCCGTCAG
GACGCCGCGA CCTTCAAGGC CGGCATCAAT GCCATCCGCG GCGACAACGC CAGCGCCGGC
TTCGACGCCC GCGTATCGAT CGGCTATCAG TTCTAG
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| Protein sequence | MQRMTLAPSR RIAMLWSAAL ALSASASPAL AQQAITTPIL ATDQNFRDLA GISENAGGSG
FVDPTTHGGA MRTGVFYRSE ALTTLSTTDW RTLSSLRIGL DVDLRTPSEI DGPTSITAPN
AGHDWLPAGA RYINVNIYGT DAPPSSASVA TPGEASAYLI ATYQNFVSDA TQRGGFRSAL
LALANEPSAA LFHCAAGKDR TGWTSMLLQS IAGVAPETIL TAYLASNIYM AESISAALAQ
IRAAVGNGPA GDLAVATAAT MLGVQESYLH AGLAQIVAQY GSMQAYLIQG LGLTQADIYV
LRAKMVYFAN LPGQDGMTGN AASGATLLNA LQNSPLSGRY TAFNYYLQSA VDAGTLGGVE
SLVGGQLHAD TVAFLARQPL WIDAALAPNA SGRDLGVGET KAWLAGVGGY FSSDGGSGVS
RSIERSGGPL AGVTWRIDAQ SSAFVGVGYN AGSVSSAGGR ADLDTMLATF GGRYGLSSLD
AGPFAEARAS VGWFTYHSSR ILGGGLGGTS GDASGGVVSG RADIGSVIRA AQWTFTPQLG
LRATRVGLGR IEERGSELAL AVDRIGYTAT SAIAGLDVAL DPRQVYGWQI APSLSLGYER
ALSNPSVETT AALYGYTVSQ VSAYDSRNLV RAGFAIAARQ DAATFKAGIN AIRGDNASAG
FDARVSIGYQ F
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