| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_3541 |
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| Symbol | metH |
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| ID | 4024055 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | + |
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| Start bp | 3932267 |
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| End bp | 3936148 |
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| Gene Length | 3882 bp |
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| Protein Length | 1293 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637963745 |
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| Product | B12-dependent methionine synthase |
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| Protein accession | YP_570665 |
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| Protein GI | 91978006 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0646] Methionine synthase I (cobalamin-dependent), methyltransferase domain
[COG1410] Methionine synthase I, cobalamin-binding domain |
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| TIGRFAM ID | [TIGR02082] 5-methyltetrahydrofolate--homocysteine methyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.0988023 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCAAGC CGATCTCTCC GAAGCGGACC GAACTGCTGG CGCTGGCCGC CGAGCGCATC
CTCGTGCTGG ACGGCGCGAT GGGCACGATG ATCCAGCAAT TGCAGTTCGA CGAAGCTGCG
TTCCGCGGCG ACCGCTACAA GGATTTCCAC CGTGACCTGC GCGGCAACAA CGATCTGCTG
ATCCTGACCC AACCGCAGGC GATCGAGGAC ATCCACGCCG CCTATCTGCG CGCCGGCGCC
GACATCGTCG CGACCAACAC CTTCTCCTCG ACTTCGATCG CGCAGGCCGA TTACGACCTG
TCCGAGATCG CCTACGAGAT GAGCTTCGAG GGCGCCCGCC TCGCTCGCAA CGCCGCCGCG
ACAGTTGCAG CCGAGGACGG CAAACCCCGC TTCGTCGCGG GCGCGATCGG CCCGACCAAC
CGCACCGCCT CGATCTCGCC CGACGTGTCT AATCCGGGCT ATCGCGCCGT GACCTTCGAC
GATCTGCGGA TCGCCTATGG CGAGCAGATC AACGGCCTGC TCGACGGCGG CGCCGACCTG
CTGCTGCTCG AAACCATCTT CGACACGCTC AACGCCAAGG CGGCGCTCTA CGCCATCGCC
GAAATCACCG AAGCGCGCGG CATCGACGTG CCGGTGATGA TCTCCGGCAC CATCACCGAC
AAATCCGGCC GCCTGCTCTC AGGGCAAATG CCGGAAGCCT TCTGGAATTC GGTGCGGCAC
GCCAGGCCGA TCACGATCGG CTTCAACTGC GCCCTCGGCG CCGAGGACAT GCGCGCGCAT
GTCGCCGATC TCAGCCGCGT CGCCGACGCG CTGGTCTGCG CCTACCCGAA CGCCGGCCTG
CCCAACGAAT TCGGCCAGTA CGACGAGACG CCGGCGCAGA TGGCGCGCAT CGTCGGCGAA
TTCGCCCGCG ACGGCCTCGT CAACATCGTC GGCGGCTGCT GCGGCACCAC GCCGGACCAC
ATCGCCGCGA TCGCGCAGGC GGTCGCCCCG CACAAACCGC GCGTCGTTCC GGAGATCGCG
CCGCGGCTGC GGCTGTCCGG ACTCGAGCCG TTCGAACTGA CCCCCGACAT TCCCTTCGTC
AATGTCGGCG AGCGCACCAA CGTCACCGGC TCGGCGAAAT TCCGCAAGCT GATCACCGCC
GGCGACTACG CCGCGGCGCT GCAGGTCGCG CGCGACCAGG TCGAGAACGG CGCGCAGATC
ATCGACGTCA ACATGGACGA AGGGCTGCTC GATTCCGAAG CCGCGATGGT CACGTTCCTG
AACCTCGTCG CCGCCGAACC GGACATCGCC AAGGTGCCGG TGATGGTCGA TAGTTCGAAG
TTCGCGGTGA TCGAGGCCGG GCTGAAGTGC CTGCAGGGCA AGCCGGTGGT GAACTCGATC
TCGCTGAAGG AAGGCGAAGA GAAGTTCCTG CACGAGGCCA ACATCGCGCG CCGCCATGGC
GCCGCGGTGG TGGTGATGGC GTTCGACGAA AAGGGCCAGG CCGACACCTA CGCGCGCAAG
ACCGAGATCT GCAAGCGCGC CTACGATATT CTGGTCGATC AGATCGGTTT CCCGCCGGAA
GACATCATCT TCGACCCGAA CATTTTCGCG ATCGCGACCG GGCTCGAAGA GCATAACAAT
TACGGCGTCG ACTTCATCGA GGCGACGCGC TGGATCCGCA AGAACCTGCC GCACGCGCAT
GTCTCGGGCG GCGTCTCCAA CCTGTCGTTC TCGTTCCGCG GCAACGAGCC GGTGCGCGAG
GCGATGCATT CGGTGTTCCT GTATCACGCC ATCAAGGCCG GCATGGACAT GGGCATCGTC
AATGCCGGGC AGATGATCGT CTATGACGAC ATCGACGCAG AACTGCGCCA GGTCTGCGAG
GACGTCATCC TCAACCGCGA TCCGGGCGCG TCGGAGCGGT TGCTCGCGCT CGCCGAGAAA
TATCGCGGCC AGGGCAAGGC GGCGAAGGAG CAGGACCTCG CCTGGCGCGG CTGGCCGGTG
GAGCAGCGGC TGAGCCACGC GCTGGTGCAC GGCATCACCG AATATATCGA GACCGACACC
GAGGAAGCCC GCGCGAAAGC GGAACGCCCG CTGCATGTGA TCGAAGGCCC GCTGATGGCC
GGCATGAACG TGGTCGGCGA CCTGTTCGGC GACGGCAAGA TGTTTCTGCC GCAGGTGGTG
AAATCCGCCC GCGTGATGAA ACAGGCGGTC GCCTATCTGA TGCCGTTCAT GGAGGCCGAG
AAGGCCGCGC AGCTCGCCGC CGGCACCCAC ACCGGCGAGC GCGCCACCGC CGGCAAGATC
GTGCTCGCGA CCGTGAAGGG CGACGTCCAC GACATCGGCA AGAACATCGT CGGCATCGTG
CTCCAGTGCA ACAATTTCGA GGTGATCGAC CTCGGCGTGA TGGTGCCCGC CGCGAAGATC
ATCGAGACCG CGAAGGCCGA GGGCGCCGAC ATCATCGGGC TGTCCGGCCT GATCACGCCC
TCGCTGGACG AGATGAGCTT CCTCGCCGCG GAGATGCAGC GCAACGGCCT CGACATGCCG
CTGCTGATCG GCGGCGCCAC CACCAGTCGG GTTCACACCG CGGTGAAGAT CGACCCGTCC
TATCCGGCCG GCAGCGTCGT GCACGTCAAC GACGCCAGCC GCGCGGTCGG CGTCGCCTCG
TCGCTGCTGT CGCGCGAGCG CGGCCCGGCC TATGCGGCCG AGATCCGCGC CGATTATGCC
AAGATCACCG CCGCGCATCT GCGTGCGCAG GCCGACAAGA AGCGCGTCGC GCTGAAAGAC
GCCCGCGCCA ATGCGACCAA GATCGACTGG TCGGCTGCGA AACCGGTGAA GCCGTCGTTC
CTCGGCGTGC GCAGCTTCAC CAACTATCCG CTGGCGGAGC TGGTCGACAC CATCGACTGG
ACGCCGTTCT TCCAGAGCTG GGAGCTCGCC GGGCGCTTCC CCGCGATCCT CGACGACAAG
GTCGTCGGCG AGGCCGCGCG GTCGCTCTAT GCCGACGCCC GCAAGATGTT GGAGCGCATC
GTCGCCGGAA ACTGGTTCAC TGCAAAAGCG GCGATCGGGT TCTGGCCGGC GAATGCGGTC
GGCGATGACA TCATCCTGTA TGCCGACGAC AAGCGGGACA GTTCGATCGG CGCGCTGCAC
ACGCTACGCC AGCAGCTCGT CAAGCGCGAG GGCCGCGCCA ATGCGGCGCT GTCGGACTTC
ATCGCGCCGC GCGGCGTGCC GGACTATATC GGCGCCTTCG TCGTCACCGC CGGGATCGGC
GAGGACGTGA TCGCCGACAA GTTCAAGGCC GACAACGACG ACTATTCGTC CATCATGGTC
AAGGCGCTGG CCGACCGCCT CGCCGAAGCC TTCGCCGAGC GGATGCACGC CCGCGTCCGC
CGCGAATTCT GGGGCTATGC GCCGGACGAG ACGCTGTCGG TCGAGGAGCT GATCCTCGAG
AAGTATCAGG GCATCCGCCC GGCGCCCGGC TATCCGGCGC AGCCCGATCA CACCGAGAAG
GCGACGCTGT TCAGGCTGCT CGACGCCGAG GTCAATGCCG GCGTGACGCT GACCGAGTCA
TATGCGATGT GGCCGGGCTC GTCGGTGTCG GGGCTGTATT TCAGCCACCC CGAGAGCGCC
TATTTCGGCG TCGGCAAGAT CGAGCGCGAT CAGGTCGAGG ACTACGCGCG GCGCAAGGGC
TGGAGCACAG CCGAGGCCGA ACGCTGGCTC GCCCCGGTGC TGAACTACAT CCCCGAGCCG
CAGCCCGCCG GCGCAGCGCA GGAAGCGATG CCGCCGCTGG CGCCGTCGGG CGAATTGCTG
CCGGCCGCGA ACGACGCCGA CACCGAACTC CCCTCACACC CGCCCGGCTG CAACTGCGCG
GTGCATCTCG CCTGGCGGAA GCAGAAAGTC GCGGCAAAGT AA
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| Protein sequence | MTKPISPKRT ELLALAAERI LVLDGAMGTM IQQLQFDEAA FRGDRYKDFH RDLRGNNDLL
ILTQPQAIED IHAAYLRAGA DIVATNTFSS TSIAQADYDL SEIAYEMSFE GARLARNAAA
TVAAEDGKPR FVAGAIGPTN RTASISPDVS NPGYRAVTFD DLRIAYGEQI NGLLDGGADL
LLLETIFDTL NAKAALYAIA EITEARGIDV PVMISGTITD KSGRLLSGQM PEAFWNSVRH
ARPITIGFNC ALGAEDMRAH VADLSRVADA LVCAYPNAGL PNEFGQYDET PAQMARIVGE
FARDGLVNIV GGCCGTTPDH IAAIAQAVAP HKPRVVPEIA PRLRLSGLEP FELTPDIPFV
NVGERTNVTG SAKFRKLITA GDYAAALQVA RDQVENGAQI IDVNMDEGLL DSEAAMVTFL
NLVAAEPDIA KVPVMVDSSK FAVIEAGLKC LQGKPVVNSI SLKEGEEKFL HEANIARRHG
AAVVVMAFDE KGQADTYARK TEICKRAYDI LVDQIGFPPE DIIFDPNIFA IATGLEEHNN
YGVDFIEATR WIRKNLPHAH VSGGVSNLSF SFRGNEPVRE AMHSVFLYHA IKAGMDMGIV
NAGQMIVYDD IDAELRQVCE DVILNRDPGA SERLLALAEK YRGQGKAAKE QDLAWRGWPV
EQRLSHALVH GITEYIETDT EEARAKAERP LHVIEGPLMA GMNVVGDLFG DGKMFLPQVV
KSARVMKQAV AYLMPFMEAE KAAQLAAGTH TGERATAGKI VLATVKGDVH DIGKNIVGIV
LQCNNFEVID LGVMVPAAKI IETAKAEGAD IIGLSGLITP SLDEMSFLAA EMQRNGLDMP
LLIGGATTSR VHTAVKIDPS YPAGSVVHVN DASRAVGVAS SLLSRERGPA YAAEIRADYA
KITAAHLRAQ ADKKRVALKD ARANATKIDW SAAKPVKPSF LGVRSFTNYP LAELVDTIDW
TPFFQSWELA GRFPAILDDK VVGEAARSLY ADARKMLERI VAGNWFTAKA AIGFWPANAV
GDDIILYADD KRDSSIGALH TLRQQLVKRE GRANAALSDF IAPRGVPDYI GAFVVTAGIG
EDVIADKFKA DNDDYSSIMV KALADRLAEA FAERMHARVR REFWGYAPDE TLSVEELILE
KYQGIRPAPG YPAQPDHTEK ATLFRLLDAE VNAGVTLTES YAMWPGSSVS GLYFSHPESA
YFGVGKIERD QVEDYARRKG WSTAEAERWL APVLNYIPEP QPAGAAQEAM PPLAPSGELL
PAANDADTEL PSHPPGCNCA VHLAWRKQKV AAK
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