Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPD_3490 |
Symbol | ligD |
ID | 4024004 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB5 |
Kingdom | Bacteria |
Replicon accession | NC_007958 |
Strand | - |
Start bp | 3880200 |
End bp | 3882992 |
Gene Length | 2793 bp |
Protein Length | 930 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 637963694 |
Product | ATP-dependent DNA ligase |
Protein accession | YP_570614 |
Protein GI | 91977955 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1793] ATP-dependent DNA ligase [COG3285] Predicted eukaryotic-type DNA primase |
TIGRFAM ID | [TIGR02776] DNA ligase D [TIGR02777] DNA ligase D, 3'-phosphoesterase domain [TIGR02778] DNA polymerase LigD, polymerase domain [TIGR02779] DNA polymerase LigD, ligase domain |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.505494 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGTGGCAG GCAAGACTCT CACGCTGTAT CGCAACAAGC GCGACTTCGA GCAGACCGCC GAGCCGCGCG GCGATGGCAA GGTCGCGCCG TCGAAGCGGC GGCGTTTCGT GATCCAGAAG CACGACGCCA CGCGGCTGCA CTACGACCTG CGGCTGGAAT ATAACGGCGT GTTCAAGTCC TGGGCGGTGA CGCGCGGGCC GTCGCTCGAT CCGCACGACA AGCGGCTCGC GGTCGAGGTC GAGGACCATC CGCTCGACTA CGGCGACTTC GAAGGCACGA TTCCCAAGGG CCAATATGGC GGCGGCACCG TGCAGCTCTG GGATCGCGGC TATTGGGAGT GCGACGATCC GGAGCGCGGT TTCAAGAAGG GCGACCTCAA ATTCTCGCTG GACGGCGAGA AGTTGCAGGG AAGCTGGGTG CTGGTGCGGA TGCGCCATGA TCGCAACGGC GGCAAGCGAA CCAACTGGTT GCTGATCAAG CATCGCGACG ACGACGCCCG CGAGGGAAAG GCCAACGATA TTCTCGACCA GGACCGCTCG GTGGCGTCCG GCCGCGCGAT GACAGAGATC GCACAGGGGA AAGGCCGCGC GCCAAAACCG TTCATGACCG GCAAGGCGGC GCGCGTGAAG GCCGACGCGG TATGGAATTC GAAGGAGGGG CTGGCCGCAG ACGAGCGTGC GGCCAATGGC GCGGGCGGGG CGGTCGCGTC GAAGCCGGCG CCGCCGAACA AGGCGAAGGC GACCACCGCA AAGTCCAAGA CGGCAAAGTC CAAGACGGCC AAGGTCGCGA AGCCGAAGCC GGGGCGCAAG GCTGCGGCGA AGCGCGCGGC GATGCCGGAT TTCGTTCCGC CGCAGCTCTG CACCTCGGTC GAGCGGCCGC CCGGCGGCGA TGGCTGGGGT CACGAGATCA AATTCGACGG CTACCGGATG CAGCTACGCG TCGACGCCGG CGAGGCGACG CTGAAGACCC GCAAGGGATT GGACTGGACC GCCAGATTTC AGGCGATCGC CGACCAGGCG GCGGGCCTGC CCGATGCGCT GATCGACACC GAGATCGTCG CGCTCGATCA GCACGGCCAC CCGGATTTCG CGGCGCTGCA GGCGGCGTTG TCGGACGGCG ACACGGACAA TCTGATCTGC TTTGCGTTCG ACCTGCTCCA TGCCGATGGC GAGGATCTGC GTGCGTTGCC GCTGTCCGAC CGCAAGCGGC GGCTGCAGGA GTTGCTCACG GCCGCGCGCG GCCGGCGCAA GCAGGGCCTG ATCCGCTATG TCGAGCATTT CGACACCGGC GGCGACGCGA TCCTGCAATC CGCCTGCAAG CTGTCGCTCG AAGGCATCGT CTCGAAGAAG CTCGATGCGC CCTATCGATC CGGCCGCAGC GACAACTGGA CCAAGGCGAA GTGCCGGGCC GGGCACGAGG TGGTGATCGG CGGCTGGAAG ACCAATGCGG GCAAATTTCG TTCGCTGCTG GTCGGCGTGC ATCACGACGA TCATCTTGCT TATGTCGGCA TCGTCGGCAC CGGCTTCGGG CAGGATGTGG TGAAGCGACT GCTGCCGGAA TTGAAAGCCC ACGCCGCCAA GGACAATCCA TTTGCCGGCG AGAACGCGCC GCGCAAGACC GCCGATGTGC ATTGGCTGGC GCCGGAGCTT GTGGCCGAGA TCGAGTTCGC CGGCTTCACC GGCGCCGGCA TGGTGCGGCA GGCCGCATTC AAGGGGCTGC GCGCGGACAA GCCGGCCGGG GAGGTCGAAG CGGAGGAGCC TGCGAAGGTC GATATCGCCG GGCCGAAGCC CGGACGCCGC GCCAAGCCCT CATCCAACGC CAAGTCGGCC AAGCCAAAGA CCGCAACGCC GAACGCGGGA CGCAGCAAGA CCCGCGCGAC CCATGCCAGT CGCGCCGAGG TGATGGGCGT GGTGATCTCC AAGCCGGACA AGGAGCTGTG GCCCGCGAGC CGGATCGGCG ATGCGGTCAA CAAGCGCGAT CTCGCGCACT ACTACGAAGC GGTCGGCGAT TGGATGATCC CGCATCTCGA GGGGCGGCCG TGTTCGATCG TCCGCGCGCC CGACGGGATC GGCGGCGAAC ACTTCTTCCA GCGACACGCA ATGCCGGGGA TGTCGAACCT GATCGCGCTT GCGAAAGTGG CGGGCGACCG CAAGCCTTAC GTGCAGATCG ACCGGGTCGA AGGATTGATC GCTGCGGCGC AGATCGGCGG CCTTGAACTG CATCCGTGGA ATTGTGCGCC GGGTCGGTAC GAGGTCCCCG GGCGGCTGGT GTTCGATCTC GATCCGGCGC CCGAAGTCGG GTTCGACGCG GTGATCGTGG CGGCGCGTGA AATGAAGGAC CGGCTCGAGG CGATCGGCCT GCCGAGCTTC TGCAAGACCA CCGGCGGCAA GGGGCTGCAC GTGGTGACGC CGCTGGTCCC CAGCGACGAT ATCGACTGGA AGCAGGCCAA AATCTTCGCG CAGACGGTGT GCGCCGGGAT GGCCGACGAC AGCCCCGATC GCTATCTGCT CAACATGTCG AAGCAGCAGA GGAAGGGAAA GATCTTCCTG GACTATCTGC GCAACGACCG GATGTCGACC GCGGTCGCTG TGCTGTCGCC TCGCGCACGC GAGGGCGCGA CGGTGTCGAT GCCGTTGACG TGGACGCAGG TGAAAGCCGG GCTCGATCCC AAGCGATACA CGGTCGAGAC AGTTCCAGCG CTGCTGGCAA AGACCAAAGC CTGGGCGGAC TACGACAAAG CCGCGGCCCC GCTGAAAGCG GCGATCAAGA AGCTCGCGTT CAGCAGGGCT TGA
|
Protein sequence | MVAGKTLTLY RNKRDFEQTA EPRGDGKVAP SKRRRFVIQK HDATRLHYDL RLEYNGVFKS WAVTRGPSLD PHDKRLAVEV EDHPLDYGDF EGTIPKGQYG GGTVQLWDRG YWECDDPERG FKKGDLKFSL DGEKLQGSWV LVRMRHDRNG GKRTNWLLIK HRDDDAREGK ANDILDQDRS VASGRAMTEI AQGKGRAPKP FMTGKAARVK ADAVWNSKEG LAADERAANG AGGAVASKPA PPNKAKATTA KSKTAKSKTA KVAKPKPGRK AAAKRAAMPD FVPPQLCTSV ERPPGGDGWG HEIKFDGYRM QLRVDAGEAT LKTRKGLDWT ARFQAIADQA AGLPDALIDT EIVALDQHGH PDFAALQAAL SDGDTDNLIC FAFDLLHADG EDLRALPLSD RKRRLQELLT AARGRRKQGL IRYVEHFDTG GDAILQSACK LSLEGIVSKK LDAPYRSGRS DNWTKAKCRA GHEVVIGGWK TNAGKFRSLL VGVHHDDHLA YVGIVGTGFG QDVVKRLLPE LKAHAAKDNP FAGENAPRKT ADVHWLAPEL VAEIEFAGFT GAGMVRQAAF KGLRADKPAG EVEAEEPAKV DIAGPKPGRR AKPSSNAKSA KPKTATPNAG RSKTRATHAS RAEVMGVVIS KPDKELWPAS RIGDAVNKRD LAHYYEAVGD WMIPHLEGRP CSIVRAPDGI GGEHFFQRHA MPGMSNLIAL AKVAGDRKPY VQIDRVEGLI AAAQIGGLEL HPWNCAPGRY EVPGRLVFDL DPAPEVGFDA VIVAAREMKD RLEAIGLPSF CKTTGGKGLH VVTPLVPSDD IDWKQAKIFA QTVCAGMADD SPDRYLLNMS KQQRKGKIFL DYLRNDRMST AVAVLSPRAR EGATVSMPLT WTQVKAGLDP KRYTVETVPA LLAKTKAWAD YDKAAAPLKA AIKKLAFSRA
|
| |