| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_3411 |
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| Symbol | |
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| ID | 4023924 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | - |
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| Start bp | 3794069 |
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| End bp | 3797461 |
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| Gene Length | 3393 bp |
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| Protein Length | 1130 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637963616 |
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| Product | Outer membrane autotransporter barrel |
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| Protein accession | YP_570536 |
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| Protein GI | 91977877 |
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| COG category | [S] Function unknown |
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| COG ID | [COG4625] Uncharacterized protein with a C-terminal OMP (outer membrane protein) domain |
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| TIGRFAM ID | [TIGR01414] outer membrane autotransporter barrel domain
[TIGR02601] autotransporter-associated beta strand repeat |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACGTGC CGACGGTGAT GAGTGGCGGG ATTGCGAAGG GCAGGGTGCG GATCGCGTCC
GTCGCCGCGG CACGGATCAA GCACTTGCTG CTGTCGACCG CGCTGGCCGG CATCGTGGTC
TATCCGCAGG CGTTGCTGGC GCAATCCTGG AATGGCGCCG TCGACGCCGA CTTTTCCAAC
GGCGCCAACT GGAGCACCGG CGTCGCACCG ACCTCAACCG ACGTCTCGAC GATCGCATCC
ACGCCGACCA CCCCGGTGGT GGCCGCGACC ACGGCGAATT CCGGGCAGAT CACGATGTCC
GGTGCCACTC TCGGCATCAA TGCCGGCGCG ACACTGGTCC TCAACACCCT GACCCTCACG
GGCGCGTCCA GCGTGACCGG GGCGGGCGCC ATCGCGACAA ATCTGTTGCA TCTGGACTCC
GGCTCGGTCG GCACCGATGT GACGCTGGCG ACGCTGGCGA CCATGGGCGG CGGCACCTTC
GGCGGCGCCA TCAGCGGCGC CGGCCAGCTG CTGGTCTCCA GCGGCTTCAA CTTCCTGACC
GGCGCCAACA CCTATAGCGG CGGCACCGAC ATCAATACCA ACGCGTTCCT GACGGTCGGC
GACAGCGCCA CCAGCGGCTC GATCACCGGC GACGTGCTGA ACAATGGCAA CCTCACCTTC
ACCCGCTCCG ATACGACGAG CTATGGCGGC GTGATTTCCG GCATCGGCGT GGTCAACAAG
AACGGCGCCG GCACGCTGAT GCTGTCCGGC GCCAACACCT ACAGCGGCGC AACGCGGATC
CTGAACGGCA CGCTGCAGAC CTCCGCCAAC AACGTCCTCA GCAGCGCTTC GGCGCTGACG
ATTTCCGCCG GGGCCACGCT CGAGCTCGGC AACACGCAAC AGACTGTGGC GTCGCTGGCC
GGCGCCGGCA CGATCAATGT CGGTGCGTCG AGCAATGGCT TTACATTCGG AGCCGACAAC
TCATCAACCA GCTTCTCCGG GACCGTCACA GGCGGTTTCA TGCGGTTTTA CAAGGAAGGC
ACCGGCACCT TCAGCTTCAG CGGCACCGGC CCGACCAGTG GCGCTATGCA AGTCGATGGA
GGCACGCTGG CTTTGGCCGG CGCGGCCGAC TTCAGCGGTG CAAGCGTCAA CTTGCAGGCC
AATACGACGC TGGACATTTC CGGGGCCAAC GCCGGCATCT CGATCAAGGG CTTGCAAGGG
GGGCTGAGCA GCACGGCGGT CCATCTCGGC AGCCGAACAT TGACGGTCCA GCGCACCGAC
TTTGCCTTCG GAAACAACTT CAGCGGCGTC ATCGACGGCA GCGGCGGCCT GACCGTCGGG
CAAAATTCGA CTTTGAACTT GTTCGGCGTC AACACCTATA CCGGCCCGAC CACGCTCAGC
TCGGCGTCGG CGACCCTCGA CCTCAGACAT GTCAGCGCCA TCGCCGCCTC CAGCGAGGTC
GATCTCGCGG CCAGCGGCGC CACGCTGGGG ATCTCCAATG CGGGCGGAGA CGCCACCATC
CAATCGCTGC GCGGCGTCGC CGGCAGCATC CTCACATTGC GCAACAACAA TCTGGTGATC
ACCAACGCGG CGTCGGATTT CGCCGGCATC ATCAAGCCGG TCTTCGGCGC GCCGACCGGC
GGTGTCATCC TCAATGGCGG CCACCAGACG CTGTCGGGCA TCAACACCTA TCTGGGCGCC
ACCACGGTCA ATGCCGGCAC GCTCTCGGTC AACGGCTCGA TCGCAACCTC GGCGCTGACC
ACCGTCAATG CCGGCGGCAC GCTCGGCGGC GCCGGCACGG TCGGCAACAC CACGATCAAC
GGCGGCGCGC TGGCGCCGGG CAATTCGATT GGCACGCTGA ACGTGAATGG CAATCTGTCG
TTCACCGCGG CATCGAGCTA CATGGTCGAA TTCTCGCCGA CCACCGCCGA CCGCACCAAC
GTCACCGGCA CCGCGACGCT CGGCGGCGCG ACGGTGAACG CGATCTTCGC CAGCGGCAGC
TATGTGGAGC GGCAGTACAC CATCCTCAAC GCCACCGGCG GCATCGTCGG CACGTTCGGC
CCGGTTGTGA ATTCCAACCT GCCGTCGGGC TTCAAGTCGA GCCTCGGTTA TGACGCCAAC
AACGCCTATC TCAAACTGGC GCTCGATTTT ACGCCGACAC CGACGCCCAC ACCGACGCCG
ACACCAACAC CAGCGCCCGA ACCGTCGCCA TTGCCGATCA ACAGCGGCCT CAACGGCAAC
CAGACCCAGG TCGCCAACGC GCTGAGTAAC TACTTCGCGC GCGCCGGCAG CATCCCGATC
GTGTTCGGCG CGCTGACGCC GGCGGGACTG AGCCTCGCGG CGGGCGAGAC CCCGACCGGC
GCTCAACAGA CGACGTTCGA TGCGATGAAC ATGTTCATGG GCGTGCTGAC CGATCCGTTC
GCCAATGGCC GTGGCCTGCC GAACGCTGCG TCCGGCGCGT CGTCATTCGC CGACGGCAAT
GCCAGCCTCG GCAATCGCAA CGGCGCAGCC CGCGACGCCC ATGCGATGAT CACCAAGGCG
GTCGTAAAGC CGCCGGTCGA GGCGCGCTGG AACGTCTGGG CCGCTGGCTT CGGCGGCGCG
CAGACTACCG ACGGCAACGC GACGCTCGGC AGCACCACCG CGACCAGCCG GCTCTACGGG
ATCGCAGCCG GCGCCGACTA CTGGCTGTCG CCGCAGACCG TCGCCGGCTT CGCAATGGCG
GGCGGCGCCA CCAGTTTCGG CCTCGCTAAC GGACTGGGGT CCGGCCGGTC CGATCTGATC
CAGGCTGGCG GCTTCGTGCG CCACAGCGTC GGCGCCGCCT ATCTCACCGC CGCCGCGGCC
TATGGCTGGC AGGACATCAC CACCGAACGA AGCGTCGCGG TCGGCGGGAT CAATCAGCTC
CAAGGCCGCT TCAACGCCCA TGCATTCTCC GGTCGGCTCG AAGCCGGCCA TCGCACTGTC
GCGTCGGCGT TCGGCGGCAT CGGTCTCACG CCCTATGCAG CCACGCAGGT CACGGCTTTC
GAGCTGCCGG CCTATGCCGA GCAAATGCTG AGTGGCGCGA ATGCCTTCGC GCTGAGCTAC
GCGTCGAAGA CCGTCACCGC GACTCGCAGC GAGTTCGGCC TGCGCAGCGA CAAGTCCTAC
GCCCTCAGCA ATGCCCTGCT GACGCTGCGC GGCCGCGCCG CCTGGGCGCA CGACTTCAAC
GTCGACCGTT CGATCGCAGC GACCTTCCAG GCGCTGCCGG GCGCAAGCTT CGTGGTCGAC
GGCGCCCGGC CGGCGCGCGA CGCGGCGCTG ACCACGGTGT CAGCGGAGAT CGCGTGGCTG
AACGGGCTCT CGCTCGCGGC CGCCTTCGAG GGCGAATTTT CAGACGTCAC CCGCAGCTAT
GCCGGCAAGG GGACGCTGCG CTACATTTGG TGA
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| Protein sequence | MDVPTVMSGG IAKGRVRIAS VAAARIKHLL LSTALAGIVV YPQALLAQSW NGAVDADFSN
GANWSTGVAP TSTDVSTIAS TPTTPVVAAT TANSGQITMS GATLGINAGA TLVLNTLTLT
GASSVTGAGA IATNLLHLDS GSVGTDVTLA TLATMGGGTF GGAISGAGQL LVSSGFNFLT
GANTYSGGTD INTNAFLTVG DSATSGSITG DVLNNGNLTF TRSDTTSYGG VISGIGVVNK
NGAGTLMLSG ANTYSGATRI LNGTLQTSAN NVLSSASALT ISAGATLELG NTQQTVASLA
GAGTINVGAS SNGFTFGADN SSTSFSGTVT GGFMRFYKEG TGTFSFSGTG PTSGAMQVDG
GTLALAGAAD FSGASVNLQA NTTLDISGAN AGISIKGLQG GLSSTAVHLG SRTLTVQRTD
FAFGNNFSGV IDGSGGLTVG QNSTLNLFGV NTYTGPTTLS SASATLDLRH VSAIAASSEV
DLAASGATLG ISNAGGDATI QSLRGVAGSI LTLRNNNLVI TNAASDFAGI IKPVFGAPTG
GVILNGGHQT LSGINTYLGA TTVNAGTLSV NGSIATSALT TVNAGGTLGG AGTVGNTTIN
GGALAPGNSI GTLNVNGNLS FTAASSYMVE FSPTTADRTN VTGTATLGGA TVNAIFASGS
YVERQYTILN ATGGIVGTFG PVVNSNLPSG FKSSLGYDAN NAYLKLALDF TPTPTPTPTP
TPTPAPEPSP LPINSGLNGN QTQVANALSN YFARAGSIPI VFGALTPAGL SLAAGETPTG
AQQTTFDAMN MFMGVLTDPF ANGRGLPNAA SGASSFADGN ASLGNRNGAA RDAHAMITKA
VVKPPVEARW NVWAAGFGGA QTTDGNATLG STTATSRLYG IAAGADYWLS PQTVAGFAMA
GGATSFGLAN GLGSGRSDLI QAGGFVRHSV GAAYLTAAAA YGWQDITTER SVAVGGINQL
QGRFNAHAFS GRLEAGHRTV ASAFGGIGLT PYAATQVTAF ELPAYAEQML SGANAFALSY
ASKTVTATRS EFGLRSDKSY ALSNALLTLR GRAAWAHDFN VDRSIAATFQ ALPGASFVVD
GARPARDAAL TTVSAEIAWL NGLSLAAAFE GEFSDVTRSY AGKGTLRYIW
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