| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_3329 |
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| Symbol | |
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| ID | 4023839 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | + |
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| Start bp | 3688254 |
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| End bp | 3689414 |
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| Gene Length | 1161 bp |
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| Protein Length | 386 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637963533 |
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| Product | secretion protein HlyD |
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| Protein accession | YP_570454 |
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| Protein GI | 91977795 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACTCTC TCAATCGACG CTCATTCGTC GCGTTGCTGC TATTGGCTCA ACTTCCACTG
CTGAGCGCCT GCGGCCCTTC GTCGAGCGAC AAGGCCGCCG CATCGGCGGA AGCGCCGCCC
ATCGTCTCCA CCGTGAAGGT CGCCGCGACG TCCCTGCCCC GCATACAGGA ATTCCCTGGG
CGTCTGGCAT CCACCCGCGT CTCGGAGGTT CGCGCGCAGG TTTCCGGAAT CGTGCTCGAA
CGAGCGTTCG TCGAAGGCAG CGACGTCGCT CAAGGCGACA CACTGTTTCG CATCAATGCA
GCCGTCTATC AGGCCGAAGT GGAAAGTCGC GCCGCAGCTC TGGATCGCGC CGAAGCCACC
CGCGTCCAGG CGGCGAGGCA ATCCGAGCGC ACCCAATTGT TGCTGGACAG GCAAGCAACC
AGCACCGCGC AAAACGACGT CTCGGTGGCG GCGTTGAAGC AGGCCGAGGC GGACGTCGCC
TCCGCCAAGG CGCAACTCGA TCGCGCCCGG ATCAACCTCG ACTTCGCAAC GGTGCGCGCG
CCCATTGCCG GGAGGATCGG ACGGGCCCTG GTCACTGAAG GCGCTTTGGT GGGGCAGAAC
GAACCGACAC ATCTCGCAAC GATCCAGCAG ATCGACCCCA TCTACGTGGA CTTCACTCAA
TCGGTCTCGG ATCCGGGCTT TCTGCCTAGC CGCGCAAATA GCGTCTCGTC CGCGGAGGTC
AGATTGATCC GTGCAGACGG ATCGATTGAC GACAACGTCG GACAGTTGCT GTTCTCCGAC
GTCAGTGTCG ATCCGGGCAC CGCCCAGGTC ACCCTTCGCG CCAAATTCTC CAATCCAAAG
GGCTCGTTGC TACCCGGCAC CTATGTCCGC GTGCGTGTCG CCACCGGCAA CTACGCGAAC
GCCGCCGTGA TTCCGCCGCA GGCCATTCAA AGAAGCAGCG CCGGAGAGGC GCAAGCCTTT
GTGGTGGATT CGGCCGGCAA AATCGCCGTC AAGCCGCTGC GGACCGGCCC TTTGACCGCA
GAGGGATGGG TCGTCCTCGA AGGGCTGTCG CCCGGAGAAA CCGTCGTCGT CGAAGGCTTT
CAAAAAATCC GTCCGGGCTC TGTGGTGAAG CCGCAGCCGT GGAAAGGCCC GAGTTCGGAC
AAGCAGGCGG AAGCCCGCTG A
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| Protein sequence | MNSLNRRSFV ALLLLAQLPL LSACGPSSSD KAAASAEAPP IVSTVKVAAT SLPRIQEFPG
RLASTRVSEV RAQVSGIVLE RAFVEGSDVA QGDTLFRINA AVYQAEVESR AAALDRAEAT
RVQAARQSER TQLLLDRQAT STAQNDVSVA ALKQAEADVA SAKAQLDRAR INLDFATVRA
PIAGRIGRAL VTEGALVGQN EPTHLATIQQ IDPIYVDFTQ SVSDPGFLPS RANSVSSAEV
RLIRADGSID DNVGQLLFSD VSVDPGTAQV TLRAKFSNPK GSLLPGTYVR VRVATGNYAN
AAVIPPQAIQ RSSAGEAQAF VVDSAGKIAV KPLRTGPLTA EGWVVLEGLS PGETVVVEGF
QKIRPGSVVK PQPWKGPSSD KQAEAR
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