| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_3272 |
|---|
| Symbol | |
|---|
| ID | 4023781 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | - |
|---|
| Start bp | 3627009 |
|---|
| End bp | 3628136 |
|---|
| Gene Length | 1128 bp |
|---|
| Protein Length | 375 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 637963475 |
|---|
| Product | rhomboid-like protein |
|---|
| Protein accession | YP_570397 |
|---|
| Protein GI | 91977738 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.00126234 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGCGGTTTG CGGCCGCCGC TGCGGTGCCT AGAGTGGGTC CGTTCTCGGC GCGTAGGCCT
TTTCCAGGCT CCTGCGCGAT CTTTACGGGG TGGCTGCAAA ACAGACCGGC GCGCGCGCGG
ATCATCGCGG CGGACAGCAC CGGCAGGCTT GAAGGGGAGG GCTTTCTCAG AGTCCTCCCC
TTTTTTGTGG GTGCCAGGGC TCGGCAGGGG ACGGCGATCA TCGGGCTCCG TTGGGCGTCG
CCGGGGGCGC CGGCGGACCG GCTTGCGCCG TTCAGCCAAG CCGCCTATGG GATCGGATCG
CCTCCGGGGC CGTGCGCCGC GGTCGGGCCG CTCGCAGCAG GTCGTAAAAC GTTGGATTCC
TCCCCCGAAA CGCAGCCGCT GCCACCGCCC CCGCCGGAGC CGCCGCGCGA ACCGATCCTG
AACCTTCCGG CCGCGCTCGC CGCCTATGTC GCGCTGCTGG CGGTGATCCA TCTGCGCGTG
TTGCTGCCGC CGGACATCGA ATATTGGACC ATCGAAGTGT TCGGCTTCAT TCCGAAGCGC
TATGACGCGA CCCTGCTGGC GACGCCGTTC GCCGGGGGCA GCGGCGCCAA GGTCTGGAGT
TTCGTGACCT ATTCGCTGCT CCACGCCAAT CTCAGCCACA TCATCTTCAA CGTGCTGTGG
CTGCTGCCGT TCGGCAGCGC AGTGGCGCGG CGGTTCGGCG CGGCGCGGTT CTTCCTGTTC
ATGGCGGTCA CCGCGGTCGG CGGCGCGCTC GCCCATCTCG TCACCCACGA GCACGAGATC
GCGCCGATGA TCGGCGCTTC GGCCTCGGTG TCCGGCGCGA TGGCGGCGGC GATCCGGTTT
GCGTTTGCGC GCGGCAGTTT CCTGTCGCTG CGCAGCGGCG ACGCCGATGC GGCGGCGCGG
GTGCCGGCGC AGCCCTTGAT CCGCGCGCTG CGCGATCCGC GCGTGCTCGC CTTCCTCGCG
ATCTGGTTCG GCATCAACAT CATCTTCGGC GTCGGCTCGA TCGCGGTCGG CAACGAAGGC
GCGAGCGTCG CCTGGCAGGC GCATATCGGC GGCTTCTTCG CGGGCCTGCT GCTGTTCTCG
TTGTTCGACC CGGTGCCGCG ATCGGCGCAG ACCTCCGCTC ACAACTAA
|
|---|
| Protein sequence | MRFAAAAAVP RVGPFSARRP FPGSCAIFTG WLQNRPARAR IIAADSTGRL EGEGFLRVLP
FFVGARARQG TAIIGLRWAS PGAPADRLAP FSQAAYGIGS PPGPCAAVGP LAAGRKTLDS
SPETQPLPPP PPEPPREPIL NLPAALAAYV ALLAVIHLRV LLPPDIEYWT IEVFGFIPKR
YDATLLATPF AGGSGAKVWS FVTYSLLHAN LSHIIFNVLW LLPFGSAVAR RFGAARFFLF
MAVTAVGGAL AHLVTHEHEI APMIGASASV SGAMAAAIRF AFARGSFLSL RSGDADAAAR
VPAQPLIRAL RDPRVLAFLA IWFGINIIFG VGSIAVGNEG ASVAWQAHIG GFFAGLLLFS
LFDPVPRSAQ TSAHN
|
|---|
| |