| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_3110 |
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| Symbol | |
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| ID | 4023615 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | - |
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| Start bp | 3458902 |
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| End bp | 3461082 |
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| Gene Length | 2181 bp |
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| Protein Length | 726 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637963311 |
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| Product | Pyrrolo-quinoline quinone |
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| Protein accession | YP_570237 |
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| Protein GI | 91977578 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG4993] Glucose dehydrogenase |
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| TIGRFAM ID | [TIGR01168] Gram-positive signal peptide, YSIRK family
[TIGR03075] PQQ-dependent dehydrogenase, methanol/ethanol family |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.125237 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACAGC CTGCCGAGCC GGTGTGGTTT GCGCACCGAT TCCTCCGTGA CAGCAAGCAA
AAGCGATCCG CCAGCAGAGA CCTGAGCGCC GGCGTAGCCG CCGCCGTCGT CGCGGTTCTG
TTGCATGGAA GCGCTGTGGC GCAGGGCGCC AAGGGCTCCG CCGAACACAT CCGCGCGGTC
ACCGGCGCGA TCGACAGCGC GGCAATCGTC GCCAATGCCA AGACCACCAA CGATTGGCCG
AGCTACGGGC TCGATTACGC CGAGACCCGA TTCAGCAAGC TCGATCAGAT CAATGCCGAC
AACGTCAAGT CGCTCGGCCT GCAATGGAGC TACAGTCTCG GATCGGACCG CGGTGTCGAG
GCGACGCCGG TGGTGGTCGA CGGCATCATG TATGTGACCG CGTCGTGGAG CGTCGTCCAT
GCGGTCGACA CGCGAACCGG CAAGAAGCTC TGGACCTACG ACCCCGGCGT CGACCGGTCG
AAGGGTTATC GCGGCTGCTG CGACGTCGTG AATCGCGGCG TTGCGCTCTA CAAGGGCAAG
GTCTTCGTCG GCGCCTATGA TGGCCGCCTG GTTGCGCTCG ATGCTGCGAC CGGCGCGAAG
GTCTGGGAGA AGGATACGCT GATCGACCAC GAGCATTCCT ACACGATCAC CGGCGCGCCG
CGGGTGTTCA ACGGCAAGGT GGTGATCGGC AATGGCGGCG CCGAGTATGG CGTGCGCGGC
TATGTCACCG CTTACGACGC CGAGACCGGC AACCAGGCCT GGCGCTGGTT CACCGTTCCG
GGCGATCCAT CAAAGCCGTT CGAGGACGCC TCGATGGAAG CGGCGGCGAA GACCTGGGAT
CCGGCCGGCA AATGGTGGAT CAACGGCGGC GGCGGCACGG CGTGGGACAC CATCACCTTC
GATCCCGACC TCAACATGGT CTACATCGGC ACTGGCAACG GATCGCCCTG GAACAGGAGC
TTGCGCAGCC CGGCCGGCGG CGACAACCTC TATCTCGGCT CGATCGTCGC GCTCAACGCC
GACACCGGCA AATACGTCTG GCACTATCAG GAGACGCCCG GCGACAATTG GGACTACACA
TCCACCCAGC CGATGATCCT CGCCGACCTC ACGATCGACG GTCAGCCGCG CAAGGTGGTG
CTGCACGCGC CGAAGAACGG CTTCTTCTTC GTGATCGACC GCACCAACGG CAAGTTCATC
TCGGCGAAGA ACTTCGTCGA TGTGAACTGG GCCACCGGCT ACGACGCGGG CGGCAGGCCG
ATCGAGGCGC CGGAGGCGCG CTCGCCGGAC AAATCCTTCG ACAGCATTCC GGGGCCGTAC
GGCGCGCATA ACTGGCACCC GATGTCGTTC AATCCGCAGA CCGGCCTCGT CTATCTGCCG
GCGCAAGGCG TGCCCATCAA CCTGACCGGT GAAAAGGCGC TGACCCAGAA CAAGATGGAG
CCGTTCAAAT TCGGCAGCAC CACCGGCTGG AACGTCGGTT TTGCGCTGAA TGCGACGCCT
CCAAAGAACT TGCCGTTCGG CCGGCTGCTG GCCTGGGATC CTGTCCAGCA GAAGGAGGTC
TGGCGCGCGG AGTATGTCGC GCCCTGGAAC GGCGGCACCC TGACCACCGC AGGCAATCTC
GTATTCCAGG GCACGGCGGA CGGCCGCTTC GTCGCGTACA ACGCCAAGAC CGGCGAGAAA
TTGTGGCAAA GTCCGCTCGG CACCGGCGCG GTCGCTGCGC CGGCCACCTA CATGGTCGAC
GGCGTGCAAT ATGTCTCGAT CGCGGTCGGC TGGGGCGGCG TGTTCGGCAT CAGCCAACGC
GCGACCGAAA CCGAAGCGCC GGGCACGGTC TACACTTTCG CGGTGGGCGG CAAGGCGCCG
ATGCCGGAAT TCGCCAAGTA TCAGATGGGC AATCTGCTGA CCGGCATCGA ATACGATCCG
AAGGATGTCC TGGAGGGCAC CGCGATCTAT GTCGCGGCCT GCGCCACCTG CCACGGGGTG
CCCGGCGTCG ACCGCGGCGG CAACGTCAAG AACCTCGGCT ACAGCACCAC CGAAAAGATC
GGGCACCTGA AGGACATCGT GTTCAAGGGG CCATTCCGCG ACAAGGGGAT GCCGGACTTC
ACCGGCAAGC TCACCGAGGC GGATGTGGTG AAGATCCAGG CCTTTATCCA GGGCACCGCA
GACGCGATCC GGCCGAAATA G
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| Protein sequence | MKQPAEPVWF AHRFLRDSKQ KRSASRDLSA GVAAAVVAVL LHGSAVAQGA KGSAEHIRAV
TGAIDSAAIV ANAKTTNDWP SYGLDYAETR FSKLDQINAD NVKSLGLQWS YSLGSDRGVE
ATPVVVDGIM YVTASWSVVH AVDTRTGKKL WTYDPGVDRS KGYRGCCDVV NRGVALYKGK
VFVGAYDGRL VALDAATGAK VWEKDTLIDH EHSYTITGAP RVFNGKVVIG NGGAEYGVRG
YVTAYDAETG NQAWRWFTVP GDPSKPFEDA SMEAAAKTWD PAGKWWINGG GGTAWDTITF
DPDLNMVYIG TGNGSPWNRS LRSPAGGDNL YLGSIVALNA DTGKYVWHYQ ETPGDNWDYT
STQPMILADL TIDGQPRKVV LHAPKNGFFF VIDRTNGKFI SAKNFVDVNW ATGYDAGGRP
IEAPEARSPD KSFDSIPGPY GAHNWHPMSF NPQTGLVYLP AQGVPINLTG EKALTQNKME
PFKFGSTTGW NVGFALNATP PKNLPFGRLL AWDPVQQKEV WRAEYVAPWN GGTLTTAGNL
VFQGTADGRF VAYNAKTGEK LWQSPLGTGA VAAPATYMVD GVQYVSIAVG WGGVFGISQR
ATETEAPGTV YTFAVGGKAP MPEFAKYQMG NLLTGIEYDP KDVLEGTAIY VAACATCHGV
PGVDRGGNVK NLGYSTTEKI GHLKDIVFKG PFRDKGMPDF TGKLTEADVV KIQAFIQGTA
DAIRPK
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