Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPD_2949 |
Symbol | |
ID | 4023452 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB5 |
Kingdom | Bacteria |
Replicon accession | NC_007958 |
Strand | + |
Start bp | 3286310 |
End bp | 3287488 |
Gene Length | 1179 bp |
Protein Length | 392 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 637963149 |
Product | ribonuclease D |
Protein accession | YP_570077 |
Protein GI | 91977418 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0349] Ribonuclease D |
TIGRFAM ID | [TIGR01388] ribonuclease D |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.967436 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGACCTGA TTTCCACCAC CGAGCAGCTC GCTGACGTCT GCACCCGCCT CGCCAGCCAC CCCGTCATCA CGGTCGACAC CGAATTTCTG CGCGAGACGA CCTATTATCC CCTGCTCTGC GTCGTGCAGA TGGCGAGCCC CGATGAAGCG GTGGTGGTCG ATACGCTGGC GCCGGGCATC GACCTCAAGC CATTCTTCGA CCTGATGGCG AACGAGAACG TCCTGAAAGT CTTCCATGCC GCCCGTCAGG ACATCGAAAT CGTCTGGCAC CGCGCCGGGA TCGTGCCGCA CCCAATCTTC GACACCCAGG TCGCGGCCAT GGTGCTCGGC TATGGCGACA GCATCGCTTA TGACCAGCTC GTTGAGCGCA TCACCGGTCA CCGGCCGGAC AAGACCCATC GCTTCACCGA CTGGTCGCGC CGGCCTCTGA CCGACGAACA GCTTCACTAC GCCGTCTCCG ACGTGACCCA TCTGCGCGAC GTGTTCGCCG CGCTCGACGC CGACCTCAAG AAGCGCGACC GCAGCGATTG GGTCAGCGAG GAGATGGAAA TCCTCACCTC GCCGAAAACC TACGACTTCC ATCCCGAGAG CGCTTGGGAG CGGCTGAAAA CCCGGGTTCG CAAGCCGAAG GAGCTTGCGG TCTTGATGGA GGTCGCTGCC TGGCGCGAAC AGGAAGCACA AACCCGCGAC GTGCCACGCA GCCGCGTACT CAAGGACGAT GCGCTTGGCG ACATCGCAAC CCATGCACCG ACTTCGCTGG AACGGCTTGC AACTCTCCGC TCGCTGCCGA AGGGGTTCGA CCGCTCGAAA TGGGGCACGG AGATCGTCGC CGCGGTCCAG CGCGGTCTGG CGCGCGACCC GCAGACGCTG CCGAAGATCG ACAAGCCGCG CAACAATTCC AACGGCTCCT CCATCGTCGA GTTGCTGAAG GTGCTGCTGC GGATGACCTC GGAGCGCCAC GCTGTCGCGG CCAAGGTGAT CGCCACCGTC GACGACCTGG AGCAGATCGC GTGCGACGAC AATGCCGATG TCGGGGCGCT CCGCGGTTGG CGGCGTGAAC TGTTCGGCGA TGCCGCCTTG GCGCTCAAGC AAGGCCGCCT CTCGCTCGCG ATCGAAAAAG GCAAAGTGGT GCGGGTCGAC CGCACCGCGG ACGCAGGACG GCCCGTCGCA GATCAATGA
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Protein sequence | MDLISTTEQL ADVCTRLASH PVITVDTEFL RETTYYPLLC VVQMASPDEA VVVDTLAPGI DLKPFFDLMA NENVLKVFHA ARQDIEIVWH RAGIVPHPIF DTQVAAMVLG YGDSIAYDQL VERITGHRPD KTHRFTDWSR RPLTDEQLHY AVSDVTHLRD VFAALDADLK KRDRSDWVSE EMEILTSPKT YDFHPESAWE RLKTRVRKPK ELAVLMEVAA WREQEAQTRD VPRSRVLKDD ALGDIATHAP TSLERLATLR SLPKGFDRSK WGTEIVAAVQ RGLARDPQTL PKIDKPRNNS NGSSIVELLK VLLRMTSERH AVAAKVIATV DDLEQIACDD NADVGALRGW RRELFGDAAL ALKQGRLSLA IEKGKVVRVD RTADAGRPVA DQ
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