Gene RPD_2949 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPD_2949 
Symbol 
ID4023452 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB5 
KingdomBacteria 
Replicon accessionNC_007958 
Strand
Start bp3286310 
End bp3287488 
Gene Length1179 bp 
Protein Length392 aa 
Translation table11 
GC content64% 
IMG OID637963149 
Productribonuclease D 
Protein accessionYP_570077 
Protein GI91977418 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0349] Ribonuclease D 
TIGRFAM ID[TIGR01388] ribonuclease D 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.967436 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGACCTGA TTTCCACCAC CGAGCAGCTC GCTGACGTCT GCACCCGCCT CGCCAGCCAC 
CCCGTCATCA CGGTCGACAC CGAATTTCTG CGCGAGACGA CCTATTATCC CCTGCTCTGC
GTCGTGCAGA TGGCGAGCCC CGATGAAGCG GTGGTGGTCG ATACGCTGGC GCCGGGCATC
GACCTCAAGC CATTCTTCGA CCTGATGGCG AACGAGAACG TCCTGAAAGT CTTCCATGCC
GCCCGTCAGG ACATCGAAAT CGTCTGGCAC CGCGCCGGGA TCGTGCCGCA CCCAATCTTC
GACACCCAGG TCGCGGCCAT GGTGCTCGGC TATGGCGACA GCATCGCTTA TGACCAGCTC
GTTGAGCGCA TCACCGGTCA CCGGCCGGAC AAGACCCATC GCTTCACCGA CTGGTCGCGC
CGGCCTCTGA CCGACGAACA GCTTCACTAC GCCGTCTCCG ACGTGACCCA TCTGCGCGAC
GTGTTCGCCG CGCTCGACGC CGACCTCAAG AAGCGCGACC GCAGCGATTG GGTCAGCGAG
GAGATGGAAA TCCTCACCTC GCCGAAAACC TACGACTTCC ATCCCGAGAG CGCTTGGGAG
CGGCTGAAAA CCCGGGTTCG CAAGCCGAAG GAGCTTGCGG TCTTGATGGA GGTCGCTGCC
TGGCGCGAAC AGGAAGCACA AACCCGCGAC GTGCCACGCA GCCGCGTACT CAAGGACGAT
GCGCTTGGCG ACATCGCAAC CCATGCACCG ACTTCGCTGG AACGGCTTGC AACTCTCCGC
TCGCTGCCGA AGGGGTTCGA CCGCTCGAAA TGGGGCACGG AGATCGTCGC CGCGGTCCAG
CGCGGTCTGG CGCGCGACCC GCAGACGCTG CCGAAGATCG ACAAGCCGCG CAACAATTCC
AACGGCTCCT CCATCGTCGA GTTGCTGAAG GTGCTGCTGC GGATGACCTC GGAGCGCCAC
GCTGTCGCGG CCAAGGTGAT CGCCACCGTC GACGACCTGG AGCAGATCGC GTGCGACGAC
AATGCCGATG TCGGGGCGCT CCGCGGTTGG CGGCGTGAAC TGTTCGGCGA TGCCGCCTTG
GCGCTCAAGC AAGGCCGCCT CTCGCTCGCG ATCGAAAAAG GCAAAGTGGT GCGGGTCGAC
CGCACCGCGG ACGCAGGACG GCCCGTCGCA GATCAATGA
 
Protein sequence
MDLISTTEQL ADVCTRLASH PVITVDTEFL RETTYYPLLC VVQMASPDEA VVVDTLAPGI 
DLKPFFDLMA NENVLKVFHA ARQDIEIVWH RAGIVPHPIF DTQVAAMVLG YGDSIAYDQL
VERITGHRPD KTHRFTDWSR RPLTDEQLHY AVSDVTHLRD VFAALDADLK KRDRSDWVSE
EMEILTSPKT YDFHPESAWE RLKTRVRKPK ELAVLMEVAA WREQEAQTRD VPRSRVLKDD
ALGDIATHAP TSLERLATLR SLPKGFDRSK WGTEIVAAVQ RGLARDPQTL PKIDKPRNNS
NGSSIVELLK VLLRMTSERH AVAAKVIATV DDLEQIACDD NADVGALRGW RRELFGDAAL
ALKQGRLSLA IEKGKVVRVD RTADAGRPVA DQ