| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_2873 |
|---|
| Symbol | |
|---|
| ID | 4023371 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | - |
|---|
| Start bp | 3201266 |
|---|
| End bp | 3202783 |
|---|
| Gene Length | 1518 bp |
|---|
| Protein Length | 505 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637963071 |
|---|
| Product | NADH dehydrogenase subunit M |
|---|
| Protein accession | YP_570002 |
|---|
| Protein GI | 91977343 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1008] NADH:ubiquinone oxidoreductase subunit 4 (chain M) |
|---|
| TIGRFAM ID | [TIGR01972] proton-translocating NADH-quinone oxidoreductase, chain M |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.593537 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.190787 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGGCTT CAATCATGAC CTGGCCGGTC CTCTCGGTCG TCACCTTCCT TCCGGTGGTC
GGTGCGGCGC TGGTTTATCT CAGCCGCGGC GACGACGAGG CGGCGCGCCG CAATGCGCGC
TGGATCGCGC TGTGGACCAC GCTCATCACC TTCGCGGTGT CGCTGATCCT GTTGTGGCGC
TACGACGCCG CCAATCCGGG CTTCCAGTTC GTCGAGAAAG CGCCCTGGCT CGCCAGCGGC
ATCGGCTATC ACATGGGCGT CGACGGCATT TCGTTGCCGT TCGTGATCCT CACCACCGCG
CTGATGCCGT TCTGCATCAT CGCGAGCTGG AAGTCGGTCA CGATGCGCGT GCGCGAATAC
ATGATGGCGT TTCTGGTGCT GGAAACGCTG ATGATCGGCA CCTTCTCGGC GCTGGATCTG
GTGCTGTTCT ATCTGTTCTT CGAGGGCGGC CTGATCCCGA TGTTCCTGAT CATCGGCGTC
TGGGGCGGTC CGCGCCGGGT CTATGCCAGC TTCAAGTTCT TCCTCTACAC GCTGCTCGGC
TCGGTGCTGA TGCTGCTGGC GATCATGGCG CTGTACTGGA CCGCCGGCAC CACCGACATT
CCGACGCTGA TGAATACCGC CGTGCCGCGC AATCTGCAGA CCTGGGCGTG GCTCGCCTTC
TTCGCCTCGT TCGCGGTCAA GATGCCGATG TGGCCGGTGC ACACCTGGCT CCCCGACGCC
CACGTCGAGG CGCCGACCGC GGGCTCCGTG GTGCTGGCCG CGATCCTTCT GAAGATGGGC
GGCTACGGTT TCCTGCGGTT CTCGCTGCCG ATGTTCCCCG AAGCGTCGCT GTATTTCGCG
CCGCTGGTCT ATGCGCTGTC GGTGATCGCG ATCGTCTACA CCTCGCTGGT CGCGCTGATG
CAGGAGGATA TCAAGAAGCT GATCGCGTAC TCCTCGGTCG CGCATATGGG CTTCGTCACC
ATGGGCATTT TCGCCGGCAA CACCCAAGGC GTCGCCGGCA GCGTGTTCCA GATGATCTCG
CACGGCATCG TATCCGGCGC GCTGTTCCTT TGCGTCGGCG TCGTCTACGA CCGGATGCAC
ACCCGCGAGA TCGCGGCCTA TGGCGGCCTC GTCAACCGGA TGCCGATCTA CGCCTTCGTG
TTCCTGGTGT TCACCATGGC GAATGTCGGC CTGCCGGGCA CCTCGGGCTT CGTCGGCGAA
TTCCTGACGC TGCTCGGCAC CTTCCGGGTC AACATTCCGA CCGCGACCAT CGCCACGCTC
GGCGTGATCC TGTCGGCAGC GTACGCGCTG TGGCTCTATC GCAAGGTGGT GTTCGGCACG
CTGACCAAGC CGGCGCTTGG CACCATCAAG GACCTGACCT GGCGCGAGGG GATCACGCTG
GCCCCGCTGG TCGTGCTGAC CATTCTGTTC GGCTTCTACC CGAAGCCGGT TCTGGATATG
TCGGCCGCCT CGGTCCAACA GCTCGTCAAC AATTACGCCG CCGCCGTGAC TGCCGTAAAG
GCAGCCGCGC TTCCGTAA
|
|---|
| Protein sequence | MSASIMTWPV LSVVTFLPVV GAALVYLSRG DDEAARRNAR WIALWTTLIT FAVSLILLWR
YDAANPGFQF VEKAPWLASG IGYHMGVDGI SLPFVILTTA LMPFCIIASW KSVTMRVREY
MMAFLVLETL MIGTFSALDL VLFYLFFEGG LIPMFLIIGV WGGPRRVYAS FKFFLYTLLG
SVLMLLAIMA LYWTAGTTDI PTLMNTAVPR NLQTWAWLAF FASFAVKMPM WPVHTWLPDA
HVEAPTAGSV VLAAILLKMG GYGFLRFSLP MFPEASLYFA PLVYALSVIA IVYTSLVALM
QEDIKKLIAY SSVAHMGFVT MGIFAGNTQG VAGSVFQMIS HGIVSGALFL CVGVVYDRMH
TREIAAYGGL VNRMPIYAFV FLVFTMANVG LPGTSGFVGE FLTLLGTFRV NIPTATIATL
GVILSAAYAL WLYRKVVFGT LTKPALGTIK DLTWREGITL APLVVLTILF GFYPKPVLDM
SAASVQQLVN NYAAAVTAVK AAALP
|
|---|
| |