| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_2851 |
|---|
| Symbol | |
|---|
| ID | 4023349 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | - |
|---|
| Start bp | 3177927 |
|---|
| End bp | 3179150 |
|---|
| Gene Length | 1224 bp |
|---|
| Protein Length | 407 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637963049 |
|---|
| Product | 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
|---|
| Protein accession | YP_569980 |
|---|
| Protein GI | 91977321 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG0743] 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
|---|
| TIGRFAM ID | [TIGR00243] 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.163758 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.784283 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTGCAG TCCCTTTGAA GAATGACGGC GCCGCCCATG CTGGCGTGCG CACCATCAGC
GTTCTCGGCG CCACCGGCTC GATCGGCGAC AGCACGATGG ACCTGCTGCG CGCTGCGCCC
GAGAAATATC GGGTCGAGTC GCTGACCGGC AACGCGAATG TCGCCGGCCT TGCAAAGCTG
GCGAAGGAGT TCAGCGCCAA ATTCGTCGCG GTGGCCGATC CGGCCCGGCT CGGCGAATTG
CGCGCCGCGC TGGCCGACAC CGAGATCGCC TGCGGGGCAG GCGAGAGCGC GGTGATCGAG
GCCGCTTCGC GGCCGGCCGA TTGGGTGATG GCGGCGATCA GCGGCGCGGC CGGTCTCAAA
CCTGCCTTGG CAGCGGTCGA CCGTGGCGCC ACCGTCGCGC TGGCCAACAA GGAGTGCCTT
GTCTGCGCCG GCGACTTCTT CATGAGCCGG GCGGTCGCGG CGGGCGCCCG GATCCTGCCG
GCCGATTCCG AGCACAATGC GCTGTTCCAG GCGCTGGCCT CGGGCAACCG CCACGAACTC
ACCCGCGTCA TCATCACCGC CTCCGGCGGG CCGTTCCGGA CCTGGGCCGC CGCCGATATC
GAACAGGCGA CGCTGGCGCA GGCGCTCAAG CATCCGAACT GGAGCATGGG CCAGAAGATC
ACGATCGACT CGGCCTCGAT GATGAATAAG GGCCTCGAGG TGATCGAGGC TTCGTATCTG
TTCGCGCTGT CGCCCGATGA GATCGACGTG CTGGTGCACC CGCAGTCGAT CGTTCATGGC
CTGGTCGAGT TTGCGGATCA TTCCGTGGTG GCGCAGCTCG GCGCGCCGGA CATGCGGATC
CCGATCGCGC ATTGTCTGGG CTGGCCGGAC CGGATCGCCG GCCGCGCGGC CAGACTCGAC
CTTGCCAAGA TCGGCCAGCT CACCTTCGAG GCGCCGGACT TCGTCCGTTT CCCGGGGCTG
CGGCTGGCTT ACGATGCGCT TCGGACCGGC AACGGAGCCA CCACGGTCTA CAATGCGGCG
AACGAGATTG CGGTCGCGGC CTTCATCGCC CAGAAAATCC GGTTTGGAGC AATCGCCCGG
CTGGTCGAGG ACACTCTCAA CGGGTGGGTC CGGGCCGGCA ATCTGGCGCC GCTCAGCAGC
GCCGACGACG CCATCGCCGT TGACCATAAC GCGCGAAAAA TGGCTGCCAC CCTATTGCCT
CAAATTGCCG CAAAGGCATC CTAG
|
|---|
| Protein sequence | MSAVPLKNDG AAHAGVRTIS VLGATGSIGD STMDLLRAAP EKYRVESLTG NANVAGLAKL
AKEFSAKFVA VADPARLGEL RAALADTEIA CGAGESAVIE AASRPADWVM AAISGAAGLK
PALAAVDRGA TVALANKECL VCAGDFFMSR AVAAGARILP ADSEHNALFQ ALASGNRHEL
TRVIITASGG PFRTWAAADI EQATLAQALK HPNWSMGQKI TIDSASMMNK GLEVIEASYL
FALSPDEIDV LVHPQSIVHG LVEFADHSVV AQLGAPDMRI PIAHCLGWPD RIAGRAARLD
LAKIGQLTFE APDFVRFPGL RLAYDALRTG NGATTVYNAA NEIAVAAFIA QKIRFGAIAR
LVEDTLNGWV RAGNLAPLSS ADDAIAVDHN ARKMAATLLP QIAAKAS
|
|---|
| |