| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_2777 |
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| Symbol | secD |
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| ID | 4023275 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | - |
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| Start bp | 3094251 |
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| End bp | 3095852 |
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| Gene Length | 1602 bp |
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| Protein Length | 533 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637962975 |
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| Product | preprotein translocase subunit SecD |
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| Protein accession | YP_569906 |
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| Protein GI | 91977247 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0342] Preprotein translocase subunit SecD |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.626907 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.768312 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTGTATT TCACTCGGTG GAAGGCGCTG GCGGTCATTC TGACGGCGCT GGCGGTGTGC
CTTTGCGCCG TTCCGAATTT CTTCCCGGAG AGCACCGTCA AGACCTGGCC GAAATGGGCG
CAGCGCCATC TGGTGCTGGG CCTCGATCTG CAGGGCGGCT CGCACATCCT GCTCGAGGTC
GACGCCAATT CGGTCAAGAA GGACAAGCTC GAATCGGTGC GCGACGATGC GCGCCGGGTG
TTGCGTGAAG CGCGGATCGC CTACACCGGC CTCGCGCAGA AGGGCGACGT CGTCGAGGTC
AAGATCAGCA AGGACACCGA GGTTCCCGCA GCGCTCACCA AGCTGCGCGA ACTGTCGCAA
CCGCTCGGCG GATTGCTCGG CTCCAACGGG CAGCGCAGCC TCGAGGTCTC CGACGCCGGC
GGCGGCGTGA TCCGGCTGGC CGTGCCGCCG GCGGCGATCG CCGACCGCAT CCGCCAGTCG
GTCGATCAGT CGATCCAGAT CGTCGAACGC CGCGTCAACG AACTCGGCAC CGTCGAACCG
CTGATCCAGC GCCAGGGCGC CGACCGCATT CTGGTCCAGG TGCCGGGCCT GCAGGACCCG
ACCCGGTTGA AGGAGCTGCT CGGCAAGACC GCCAAGCTCG ACTTCCGCAT GGTGGATTCC
TCGGTGTCGG CGGATCAGGC CCAGCAGGGA CGGGCGCCGC CGGATTCCGA CGTGCTGATG
AGCGCGCAGA CGCCGAAGCA GCCTTATGTG ATCAAGAAGC AGATTCTGGT GTCCGGCGGT
GATCTCACCG ACGCCCAGCC CGGCTTCGAT TCGCGCACCA GCGAGCCGAT CGTCAGCTTC
CGCTTCAACA CCAGCGGCGC GCGCAAATTC TCCCGCGCCA CCACCGAGAA TGTCGGCCAG
CCGTTCGCGA TCGTGCTCGA CAACGAGGTG ATTTCGGCGC CGGTGATCCG CGAGCCGATC
ACCGGCGGCT CCGGCCAGAT TTCGGGCAGC TTCACAGTGC AGCAGGCCAA CGACCTCGCG
ATTCTGCTGC GCGCCGGCGC ATTGCCGGCG CCGCTGACGA TCATCGAGGA GCGCACCGTC
GGTCCCGGCC TCGGCCAGGA TTCGATCGAG AAGGGCGAAC TCGCCGCCTA TGTCGGTTCG
ATTCTCGTCA TCATCTTCAT GCTGCTGACC TACCGGCTGT TCGGCGTGTT CGCGAACCTC
GCTGTCGCGG TCAACGTGGC GATGATCTTC GGTGTGCTGT CGCTGCTCAA TGCGACGCTG
ACGCTGCCGG GAATCGCCGG CGTCGTGCTC ACCGTCGGCA TCGCGGTCGA TTCCAACGTG
CTGATCTACG AGCGCATCCG CGAAGAGCTT CGTGCCGGCC GCAACGCGAT CTCCGCGATC
GACGCCGGCT TCAAGCGGGC GCTGTCGACG ATTCTCGATT CCAACATCAC CACCTTCATC
GCCGCCGCGG TGCTGTTCTA CATCGGCACG GGCCCGGTGC GCGGCTTCGC GGTGACGCTC
GGTATCGGCA TCATCACCAC CGTGTTCACC GCCTTCACCG TGACCCGGCT GATCGTCGCC
ACCTGGGTGC GGTGGAAGCG GCCGCAGACC GTGCCGATCT GA
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| Protein sequence | MLYFTRWKAL AVILTALAVC LCAVPNFFPE STVKTWPKWA QRHLVLGLDL QGGSHILLEV
DANSVKKDKL ESVRDDARRV LREARIAYTG LAQKGDVVEV KISKDTEVPA ALTKLRELSQ
PLGGLLGSNG QRSLEVSDAG GGVIRLAVPP AAIADRIRQS VDQSIQIVER RVNELGTVEP
LIQRQGADRI LVQVPGLQDP TRLKELLGKT AKLDFRMVDS SVSADQAQQG RAPPDSDVLM
SAQTPKQPYV IKKQILVSGG DLTDAQPGFD SRTSEPIVSF RFNTSGARKF SRATTENVGQ
PFAIVLDNEV ISAPVIREPI TGGSGQISGS FTVQQANDLA ILLRAGALPA PLTIIEERTV
GPGLGQDSIE KGELAAYVGS ILVIIFMLLT YRLFGVFANL AVAVNVAMIF GVLSLLNATL
TLPGIAGVVL TVGIAVDSNV LIYERIREEL RAGRNAISAI DAGFKRALST ILDSNITTFI
AAAVLFYIGT GPVRGFAVTL GIGIITTVFT AFTVTRLIVA TWVRWKRPQT VPI
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