| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_2709 |
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| Symbol | |
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| ID | 4023207 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | + |
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| Start bp | 3024284 |
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| End bp | 3025519 |
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| Gene Length | 1236 bp |
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| Protein Length | 411 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637962908 |
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| Product | GGDEF domain-containing protein |
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| Protein accession | YP_569839 |
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| Protein GI | 91977180 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.887365 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.569285 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCGCTCG ATTCTTCTAC GTTATTCCTG GTCGCGACGC TGATCTGCAC GCTGCTCGGA
GGAATGCTGC TTCATTTCGG CCGACAGGAG AAGATCCCGG CGCTCTACTG GTGGGGTTGC
GCTTATCTGA TCGGCGCGGC TTCTGTGGCG CAATGGCAGA TCCTGGGTGC ATTTCTGCCC
GAGAACGTCG TGCTGTCGTT GGCCGGCGTG GGTTTCATCG CCTGCGGCAT GATGTGGAAC
GCGGCGCGTG TGTTCCATGG TCACAAACCG AATTGGCCGG GCCTCGTCCT CGGCGCGATC
GCCTGGGTCG CGGCGGTCGT CAGCCTGCCG CCGGAACTGT CGTGGCTGCG CATGAATATC
GGCGCCGGAC TTGTCGCGAT TTATGCCGGG CTGACCGCGA GTGAGCTGTT TGCCGAGCGT
CGCAAGTCAA TGACGCGACG CTGGCCGGCG ATGCTGGTGC CGCTGCTGCA CGGCGGCGTG
CTGATGCTGC CGATCGTGCT CGCCGAACTT CTGCCGGCAC AAGGCACAAG CTCTACCAAT
AACGTCTGGA TTATGATCTT CGCGATCGAG CTGGTGCTCT ACGCGATCGG CACGGTGTTC
GTGATCTTCA TGCTGGTGTC GGAGCGTACC GTGCGCGCCC ACAAGACGGC GGCCTCGCTG
GATCCGCTGA CCGGCCTGTT CAACCGCCGC GGCTTCTCGG AAGCGACCGG CCGGATGATC
GAACGCGAAG CCGAAGCCGG GCGTCCGGTC ACGGTGATGA TCTTCGACCT CGATCACTTC
AAATCGATCA ATGACCGCTT CGGCCACCCG GCCGGCGACG AGGTGATCAA GCTGTTCGCG
ACGATCGTCT CCGGCTCTCT GCGGATGTCC GATCTGTGTG GCCGGATCGG CGGCGAGGAA
TTCGCGGCGC TGCTGCCGTG CTCGATCGAA GAGGCGATGA CCGCCGCGGA GCGGGTGCGT
GAAGCATTCG AGGGCTGCGG CCTGGAAGTC GATGGTGCGC CGATTGCAAC CACGGTGAGC
ATCGGCGTCG CCGGTGGACC GGCCAATATC GAGCTCGAAG TGCTGCTCGC CGCGGCCGAC
ACAGCGCTGT ATCAGGCCAA GCGTGGCGGT CGTAACCGCG TGGTGGCGAC CGCCGAACAG
CCGCTGTCGC TGGAGCAGGG TCGGCGCCGC GCCGCCCAGC GCGACGAATC TCGCCAGCCG
GTGATCGTCC GTAGCGCGAT GAGCATCGGC GCCTGA
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| Protein sequence | MSLDSSTLFL VATLICTLLG GMLLHFGRQE KIPALYWWGC AYLIGAASVA QWQILGAFLP
ENVVLSLAGV GFIACGMMWN AARVFHGHKP NWPGLVLGAI AWVAAVVSLP PELSWLRMNI
GAGLVAIYAG LTASELFAER RKSMTRRWPA MLVPLLHGGV LMLPIVLAEL LPAQGTSSTN
NVWIMIFAIE LVLYAIGTVF VIFMLVSERT VRAHKTAASL DPLTGLFNRR GFSEATGRMI
EREAEAGRPV TVMIFDLDHF KSINDRFGHP AGDEVIKLFA TIVSGSLRMS DLCGRIGGEE
FAALLPCSIE EAMTAAERVR EAFEGCGLEV DGAPIATTVS IGVAGGPANI ELEVLLAAAD
TALYQAKRGG RNRVVATAEQ PLSLEQGRRR AAQRDESRQP VIVRSAMSIG A
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