Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPD_2680 |
Symbol | |
ID | 4023177 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB5 |
Kingdom | Bacteria |
Replicon accession | NC_007958 |
Strand | + |
Start bp | 2994179 |
End bp | 2995360 |
Gene Length | 1182 bp |
Protein Length | 393 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 637962878 |
Product | secretion protein HlyD |
Protein accession | YP_569810 |
Protein GI | 91977151 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0845] Membrane-fusion protein |
TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.957988 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.305533 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTTGAAAG ATCATTCGCG TCGTTCGACC GGTTTAATCG CTTGCGCGAT CGCCGTGATG TCGCTGACGT CCTGCACCGA CCAGGGCGCT GCGCCCACCG CGACTGCAGC GGCTCTCCCC GAGGTCGGCG TCGTCACGGT CGAGGCGAGA CCGGTGACAC TCACCAAGGA GCTGCCCGGG CGCATCACGC CGATGCGAAT CGCAGAGGTC AGGCCCCGCA TCACCGGCAT CGTGACCGAA CGCGCCTTTC AGCAGGGCAG CCTGGTCGAG GCCGGGACAG TGCTGTACCG GATCGATCCC GCGCCATTCC AGGTTGAACT CGACAAGGCC CGCGCGGCGC TCGCGAAGGC GGAAGCGGTG CTGTATCAGG CGTCCCGCCA GGAAGACCGT CTGAAGAACC TTCTGACCGG GCAGGCCACG ACCCAGGCGC AGTACGAACT CGCGGTCGCC TCCGAGCGCC AGGCCGAGGC CGAGGTGTCG GCCCAGAAGG CCGCGGTCGA CCAGGCGCAG CTCAACCTCA ATCTGGCGAC GGTGAGGGCG CCGATCAGAG GCCGCATCGG ACGGGCGCTG GTCACCGAAG GCGCGCTGGT CAACCCCAAC GAGACGTCGC AGCTGGCGAC CATTCAACAG CTCGATCCGA TCTATGCCGA CTTCACGCAA TCGGTCGGCG AGCTCAGCCA ACTCAAGCAC GATCTCGCCG AAGGCCGTCT GAAAAAAGTG TCTTCGGAAG CGGCGCGGGT CCGCTTGGTG CTCGACGACG GCACGCCCTA CGATCACGTC GGCCGGCTGC TGTTCTCGGA CGTCAGCGTC GATCCCGGCA CGGCCAGGGT GACGCTGCGC GGCGAATTCC CCAATCCCCA GGCCGATCTG CTGCCGGGCA TGTATGTGCG GGTGCAGATC GAGGAGGGGA TCGACATCGA CGGCATCGTG GTCCCGGCCC AGGCGGTTCA GCGGACAACG GCTGGCTCCG CCGCAATTTT CGTCGTCAAC GATGTCGGGC GAGCGATGCT GCAGCCGGTG CGGGCGGGCC GGACGCTCGC AAACGGAATC CTGATCGAGG AGGGGCTGAA GCCGGGCTGG CGGATCGTCG TCGACGGCTT TCAGAAGTTC TCGCCGGGCG CCGCGGTCAA GCCGGTGCCG TGGGAGAGCG CCGGCGCGGA TGCGCGGAGC AAGCCGAACT GA
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Protein sequence | MLKDHSRRST GLIACAIAVM SLTSCTDQGA APTATAAALP EVGVVTVEAR PVTLTKELPG RITPMRIAEV RPRITGIVTE RAFQQGSLVE AGTVLYRIDP APFQVELDKA RAALAKAEAV LYQASRQEDR LKNLLTGQAT TQAQYELAVA SERQAEAEVS AQKAAVDQAQ LNLNLATVRA PIRGRIGRAL VTEGALVNPN ETSQLATIQQ LDPIYADFTQ SVGELSQLKH DLAEGRLKKV SSEAARVRLV LDDGTPYDHV GRLLFSDVSV DPGTARVTLR GEFPNPQADL LPGMYVRVQI EEGIDIDGIV VPAQAVQRTT AGSAAIFVVN DVGRAMLQPV RAGRTLANGI LIEEGLKPGW RIVVDGFQKF SPGAAVKPVP WESAGADARS KPN
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