Gene RPD_2640 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPD_2640 
Symbol 
ID4023137 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB5 
KingdomBacteria 
Replicon accessionNC_007958 
Strand
Start bp2958573 
End bp2959463 
Gene Length891 bp 
Protein Length296 aa 
Translation table11 
GC content64% 
IMG OID637962838 
Productdihydrodipicolinate synthase 
Protein accessionYP_569770 
Protein GI91977111 
COG category[E] Amino acid transport and metabolism
[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0329] Dihydrodipicolinate synthase/N-acetylneuraminate lyase 
TIGRFAM ID[TIGR00674] dihydrodipicolinate synthase 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00311988 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGCAGCCA AGACGAATTT CCGGGGGTCG TTTACCGCCT TGGTCACGCC GTTCAAGAAC 
GGTTCGGTCG ACGAGCAGGC CTTTCGCGAT TTGGTCAAAT GGCAGATCGC AGCAGGGACC
AACGGACTGG TGCCGGTCGG GACCACGGGC GAGAGCCCGA CGCTGAGCCA TGACGAGCAC
AACAAGGTGG TGGAATGGTG CGTCGAAGAG GCCGGGGGAC GGGTGCCGGT GATCGCCGGG
GCTGGATCGA ATTCCACCCG TGAGGCCATC GAGCTCGCCA GACATGCCGA GAAGGCGGGC
GCGGATGCGG TCCTGGTTGT GACGCCTTAT TACAACAAGC CCACCCAGGA GGGCATGTAT
CAGCACTTCA AGGCGATCAA TGACGCGATC GGGATCCCGA TCATCATCTA CAACATCCCG
CCGCGATCGG TGGTCGACAT GTCGGTCGAC ACCATGTGTC GCCTGTATGA GTTGGAGAAC
ATCGTCGGCG TCAAGGACGC GACGGCCAAT CTGGGCCGGG TGTCGCAGCA GCGCCACGCG
ATGGGGGCGG ATTTCATCCA GCTCTCCGGC GAGGACATGA CCGCGCTGGC CTATATGGCC
GCGGGCGGCC ACGGCTGCAT CTCGGTGGTG TCGAATGTGG CGCCGAAGCT CTGTGCCGAC
CTGATGGCGG CGGTATTTGC CGGCGACTAT CCCGGCGCGC TGAAGATCCA GGACCGGCTG
GTGCCGTTGC ACGATGCGGT CTTCAAGGAG CCCGGCGTGG CCGGCGCCAA ACATGGCTTG
ACGCTGCTCG GCCGGGTTCA GGAAGAAGTG CGGCTGCCGC TGATGCCGGT GACCGAACCG
ACGGGCAAAG CCATCCGCGC CGCCATGATT CACGCCGGGT TGCTGAACTA A
 
Protein sequence
MAAKTNFRGS FTALVTPFKN GSVDEQAFRD LVKWQIAAGT NGLVPVGTTG ESPTLSHDEH 
NKVVEWCVEE AGGRVPVIAG AGSNSTREAI ELARHAEKAG ADAVLVVTPY YNKPTQEGMY
QHFKAINDAI GIPIIIYNIP PRSVVDMSVD TMCRLYELEN IVGVKDATAN LGRVSQQRHA
MGADFIQLSG EDMTALAYMA AGGHGCISVV SNVAPKLCAD LMAAVFAGDY PGALKIQDRL
VPLHDAVFKE PGVAGAKHGL TLLGRVQEEV RLPLMPVTEP TGKAIRAAMI HAGLLN