Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPD_2626 |
Symbol | |
ID | 4023123 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB5 |
Kingdom | Bacteria |
Replicon accession | NC_007958 |
Strand | + |
Start bp | 2945234 |
End bp | 2946022 |
Gene Length | 789 bp |
Protein Length | 262 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 637962824 |
Product | invasion associated locus B |
Protein accession | YP_569756 |
Protein GI | 91977097 |
COG category | [R] General function prediction only |
COG ID | [COG5342] Invasion protein B, involved in pathogenesis |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.194034 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 2 |
Fosmid unclonability p-value | 0.0000348412 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGAAGTCTT GCAACTTGGT CGCGACGGCC GGGCCGCGCG GGCAGGCATT CGCTCTGCTC ACGGCAGCGG CCTTTACCGC TCTGACCGTC GCTTCCGCAG CGCAAGCGCA AGCCCCGCAG CCGCAGCAGC AGCCGGCCGC TCCGAAGGCG GCAGCCCCCG CCCAGCCAAA GGCTCCTCCG AAGGCGGCTC CGAAAGCCGG CCCCGCCGCG CAGGCGCCCG CCGCCGCGCC GCAGCCGGAC CAGCAGGTTC AGCTGATTTA CGCGCCGTGG ACCAAGTTCT GCCTCAAGGG CCAAGACGCC AATGCGAAGC AGGTCTGCTT CACCGGCAAG GACGGCCGCA TTGAGTCCGG CCAGCCGGTG ATTGCGGCGG TGATCATCGA GCCGGAAGGC GAGCCGAAGA AGATCCTGCG CGTGACGCTG CCGCTCGGCA TGCAACTCGT TCATGGCACC CGAATCATCG TCGACAGCAA CGCGCCGCAG CAGAGTCCTT ACGTGATCTG TTTCGCCAAC GGCTGTATGT CGGACTATGA GGCGACCGCG GAGATGCTGG CCAGCATGAA GAAGGGTCAG AACCTGGTCG TGCAGGCGAT CAATTCCAAC GGTGCGCCGC TGACGCTGCC GCTGCCGCTG GCCGAGTTCG CCAAGGCCTA TGACGGTCCG CCGACCGATC CGAAGCAGTT CGAAGAGACC CAGAAGAAGC TGCAGGAAGA ACTGCAGAAG CGCGCCGAAG AGCAGCGCAA GAAGCTCGAG GCGCAGGCCC CGGCAGGCGC CAATCCGGCC CCGAAGTAA
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Protein sequence | MKSCNLVATA GPRGQAFALL TAAAFTALTV ASAAQAQAPQ PQQQPAAPKA AAPAQPKAPP KAAPKAGPAA QAPAAAPQPD QQVQLIYAPW TKFCLKGQDA NAKQVCFTGK DGRIESGQPV IAAVIIEPEG EPKKILRVTL PLGMQLVHGT RIIVDSNAPQ QSPYVICFAN GCMSDYEATA EMLASMKKGQ NLVVQAINSN GAPLTLPLPL AEFAKAYDGP PTDPKQFEET QKKLQEELQK RAEEQRKKLE AQAPAGANPA PK
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