Gene RPD_2614 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPD_2614 
Symbol 
ID4023111 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB5 
KingdomBacteria 
Replicon accessionNC_007958 
Strand
Start bp2926192 
End bp2927868 
Gene Length1677 bp 
Protein Length558 aa 
Translation table11 
GC content64% 
IMG OID637962812 
Productputative beta (1-6) glucans synthase 
Protein accessionYP_569744 
Protein GI91977085 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG5309] Exo-beta-1,3-glucanase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.272631 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00127237 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGCCCTTGG CAGATCGCCT GCGAGCGGGT AATCGACGAG ACTTCTGGAG GACGGAACCC 
ATTTCTTTTC GCACGCCGCT GGCGCTTCTC CCGATTTCTC TCGGCATCAT CTTCGGCGTC
TGGTGGTGGA TCGCCACGCC GGTCACCTTG GCACGCGCTC CGATCGACCC GAGCGACAAG
CTCGAATGCG TCTCGTATGC GCCATTCCGC GGCGAGCAGA CGCCGCTCGA TCCGACGACG
CGGATCGGCG CGGAACAGAT CGAGCAGGAT CTGACGCAAC TCGCCAAGAT CTCGAAATGC
GTGCGGACCT ATTCGGTCGA CAACGGGCTT GAGCAGTTGC CGGCGATTGC CGGAAAGGTC
GGGCTCAAGG TGCTTCAGGG CATCTGGCTC GGCAACGAAC GCGCCAAGAA CCTGGCGCAG
ATCGCCGTCG CGGTCGGCCT GACGAAGGAT CATCCGAACG TCATCAGTTC GCTTGTGGTT
GGCAACGAAG TGCTGCTGCG GGGCGAAATG ACGGCCGCAG ACCTTGCCGC GACGATTCGT
CTGGTGAAGT CGCAGGTCAA GGTGCCTGTC ACCTATGCGG ATGTCTGGGA ATATTGGCTG
CGCAATCGCG ATATCTACGA CGCGGTCGAC TTCGTCACGA TTCACATCCT GCCGTATTGG
GAGGATCTGC CGATTCGCGC GCGCAATGCC GCGAGCCACG TCGATCAGAT CCGCAAGCGC
GTCGCTGTCG CATTTCCGGC GAAGGAGATC CTGATCGGCG AGACCGGCTG GCCCAGCGCC
GGGCGGATGC GCGAGGGCGC ACTGCCGTCT CGCGCCAACC AGGCGCGCGT GGTGTCGGAA
ATCCTCGGCC TTGCGAAGCT CGAGAACTTC CGGGTCAATC TGATTGAAGC CTACGATCAG
CCTTGGAAGC GGGAGCTCGA GGGCACCGTA GGAGGCTATT GGGGTCTGAT CGACGCCGAC
AATCGTGAAC TGAAATATCC GGCTGGCCTG CCGATCAGCA ATTTCCCGCA GTGGAAGCTG
TCGATGGCCG CCGGCATGGT GCTGAGCGTG TTGGTATTCG CCGCTGCGAT GCTGACGCTG
CGCCGGAAAC CTTGGCCGCC GCGGCTGGTG GCGTGGCTTG CAGTGGGGGC GTCCGCGACC
GCGGGCGGCG TATTGCTCGG TGTCGCCGTC GACAAGATGC TGGTCGAGAG CTACGGCTGG
GGCCGATGGC TGCAATGGGG CTTGCTGCTG GCGAGCGGGG TGCTGACGCC GATCCTGGCC
GCCATTGCGC TGGTGTCCGG ACGGGCGCTG CCGACTTTCC TCGAACTGTT CGGTCCGCGC
GAAGATCGCA GCCGGTCGTT CCTGACCTAT GCGCTCGGTC TGTCGGTGGT GGTGACCACC
CTGATCGGCG CGCAGAGCGC GCTCGGCTTC ACCTTCGATC CGCGCTATCG CGACTTCCCG
TTCGCCTCGC TGACGATGGC GGTGCTGCCG CTGTTTCTGC TGATGCTGCT CAATCGGCCG
CAGCAGGGCG TGCGGCCAAT CGCCGAAGCG GTGTTCGCCG GGGTGTTCGC CGTGTCCGCG
CTCTACACGG TGTTCAACGA GGGGCCGAAG AACTGGCAGT CGCTGTGGAC CTGCGCGGTC
TATGCGATGA TGGCGCTCAC GCTGTGGCAG GCGCGGGCCG CGCAAACCCC AAAATAA
 
Protein sequence
MPLADRLRAG NRRDFWRTEP ISFRTPLALL PISLGIIFGV WWWIATPVTL ARAPIDPSDK 
LECVSYAPFR GEQTPLDPTT RIGAEQIEQD LTQLAKISKC VRTYSVDNGL EQLPAIAGKV
GLKVLQGIWL GNERAKNLAQ IAVAVGLTKD HPNVISSLVV GNEVLLRGEM TAADLAATIR
LVKSQVKVPV TYADVWEYWL RNRDIYDAVD FVTIHILPYW EDLPIRARNA ASHVDQIRKR
VAVAFPAKEI LIGETGWPSA GRMREGALPS RANQARVVSE ILGLAKLENF RVNLIEAYDQ
PWKRELEGTV GGYWGLIDAD NRELKYPAGL PISNFPQWKL SMAAGMVLSV LVFAAAMLTL
RRKPWPPRLV AWLAVGASAT AGGVLLGVAV DKMLVESYGW GRWLQWGLLL ASGVLTPILA
AIALVSGRAL PTFLELFGPR EDRSRSFLTY ALGLSVVVTT LIGAQSALGF TFDPRYRDFP
FASLTMAVLP LFLLMLLNRP QQGVRPIAEA VFAGVFAVSA LYTVFNEGPK NWQSLWTCAV
YAMMALTLWQ ARAAQTPK