| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_2577 |
|---|
| Symbol | |
|---|
| ID | 4023073 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | + |
|---|
| Start bp | 2887328 |
|---|
| End bp | 2888896 |
|---|
| Gene Length | 1569 bp |
|---|
| Protein Length | 522 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637962775 |
|---|
| Product | Type I secretion outer membrane protein, TolC |
|---|
| Protein accession | YP_569708 |
|---|
| Protein GI | 91977049 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1538] Outer membrane protein |
|---|
| TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.00589159 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAGTGTGG CCCGAAGGCC CCATCGCACA AGTTTCACTC GGAGAGTGAA GCCAGGGGTT
CCTTCGTCGG ATTGCGTGCC TTATTGTGCA ATGGGACTCA CTTCGGCTGA CGCGGCTCGC
TTGATATCTG CGACCGTCAG CTGGGCGACA AATCGAACTG CAAAATTGGA TGCCAGAATG
GATGGGGTGA AGCGGTTCTC CGGCCTTGTG ACTGCCGGCA TCGTTCTGGT GTGTCTGGGC
CCGGCCCCGG TCTCGGCCGA AACGATCGAA TCGGCGCTGA TTCGCGCCTA TCAGACCAAT
CCGCAGCTCA ACGCGCAGCG CGCTTCGGTG CGCTCGACCG ACGAACAGGT TCCGCAGGCG
CTCTCGGGCT ACCGGCCCAA GGTGTCGATC ACCGCGAGCG GCGGCTACCA ATACACCGAC
GTCAATTCGC TCTTCGGCGG CAACCAGATC CATCTGAGTG GCAGCAACTA TCCGCGCACC
GTCGGGGCGA CGGTGTCGCA GACGCTGTTC AACGGCAACC AGACTGCGAA CCGGACCCGC
GCTGCCGAGA GCCAGGTGTC GTCGGCGCGT GAAGGTCTGC GCGTGCTGGA ACAGTCGGTG
CTGTTGTCGG CTGCCACGAT CTACATGGAC TATCTGCGCG ACTCGGCCAC CGTCGAGGTG
CAGAAGTCCA ACGTCCGCGT GCTCGAACAG ACCTTGAAGC AGACCAATGA TCGCTTCAAC
GTCGGCGAGG TCACCCGCAC CGACGTGGCG CAGTCGCAAG CGCAGCTTGC AGCAGGCAAC
ACCCAGCTTC TCACCGCCGA GTCCAATCTC ACCACCACGC GCGCGAACTA TCGCCGCATC
ATCGGCAGCG AGCCGACGGG GCTGGCCCCC GGGTCGCCGG TGGATCGCTT CCTGCCAGCG
ACGCTGGCGC AGGCTGTCGA CCTCGGGCTG ACCGAAAATC CGAACGTCAC TGCGGCAATG
TTCGGCATCG ACGTCAGCTA TCTCAACGTC AAGATCAACG AAGGTGCGCT GTTCCCGACC
GTCTCGCTGC AGGCCAATGC GCAGCAGGGG TACGAGCAGT CGATCACGTC GCCGAGGCAG
TTCGTCGCTT CGGCGATCGC CCAGGTGTCT GTGCCGATCT TTCAGGGCGG CGCCGAATAC
GCGCTGATCA GACAGTCGAA GGAGTCGCTG TCTCAGCAGC GTCTCAATCT CGAACAGGTC
CGCGACCAGG CCCGCGCCAG CATCGTGCAG GCCTGGGGCC AGTTGCAGGC GGGCCGGGCG
CAGGTTGCCT CGGCACAGTC CCAGGTCAAG GCCTCGGAGA TCGCATTGAA CGGCGTGCGT
GAAGAGGCGA GGGCCGGGCA GCGCACCACG CTCGACGTCC TCAATGCGCA GCAGGCGCTG
GTCAATGCGC GTGTGTCGTT GGTGACCGCC CAGCACGACC GCGTGGTGGC GTCTTACGCG
GTGCTGAGCG CCGTCGGCCG GCTGGCGCCC CAGGTGCTCG GACTGAAGAC CGACATCTAC
GATCCCAGCG TTCACTATCA GCAGGTCCGC GACAGCTGGG TCGGCGTTCG CACGCCAGAC
GGTCGCTGA
|
|---|
| Protein sequence | MSVARRPHRT SFTRRVKPGV PSSDCVPYCA MGLTSADAAR LISATVSWAT NRTAKLDARM
DGVKRFSGLV TAGIVLVCLG PAPVSAETIE SALIRAYQTN PQLNAQRASV RSTDEQVPQA
LSGYRPKVSI TASGGYQYTD VNSLFGGNQI HLSGSNYPRT VGATVSQTLF NGNQTANRTR
AAESQVSSAR EGLRVLEQSV LLSAATIYMD YLRDSATVEV QKSNVRVLEQ TLKQTNDRFN
VGEVTRTDVA QSQAQLAAGN TQLLTAESNL TTTRANYRRI IGSEPTGLAP GSPVDRFLPA
TLAQAVDLGL TENPNVTAAM FGIDVSYLNV KINEGALFPT VSLQANAQQG YEQSITSPRQ
FVASAIAQVS VPIFQGGAEY ALIRQSKESL SQQRLNLEQV RDQARASIVQ AWGQLQAGRA
QVASAQSQVK ASEIALNGVR EEARAGQRTT LDVLNAQQAL VNARVSLVTA QHDRVVASYA
VLSAVGRLAP QVLGLKTDIY DPSVHYQQVR DSWVGVRTPD GR
|
|---|
| |