| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_2568 |
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| Symbol | |
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| ID | 4023062 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | + |
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| Start bp | 2874610 |
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| End bp | 2876058 |
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| Gene Length | 1449 bp |
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| Protein Length | 482 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637962764 |
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| Product | RND efflux system, outer membrane lipoprotein, NodT |
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| Protein accession | YP_569699 |
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| Protein GI | 91977040 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.0985785 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCATCG CGCTGCGCTA CCTGCGTCGG TCCGTGAGGA TGGTCGCTGC CTCGGCGCTC
GTCGTCGGCG CGGGCGGCTG CATCCTGACC AAAGACCTGC CGGACCCGGC GCTCGACCTG
CCGCCGCGCT ACAAGGCGGC GGCGCTGACG ACGACCGACG CGCCGCCTGC GCTCGATTGG
TGGCGCGGCT TCCGCTCGCC CGAGCTGACG CAATTGATGG AAGAGGCGCA AACCGTCAAT
CTCGACATCG CCGCGGCAAC CTCACGGATC CTGCAGGCCG ACGCCCAGGC GCGTATCACC
GGCGCGGCGC TGCTGCCCTC GCTCACCGGC AACAGCAGCG GCTCGCAGAA CAAAACGTCG
GGCAGCAATG TCAGCAACAC CACGATCGCC GGCCGCCGGT TTTCAACCTA TGCGGCTTCG
CTGAGCGCGA GTTACGAGAT CGACTTCTGG GGCAAGAATC GCGACGCCGC GCTGGCGGCC
GAGGAAACCG CGACCGCCAA CCGGTTCGAT CGCGATGTCG TCGCGCTGAC GACGATGGCG
AGCGTCGCCA ATGCCTATTT CCAGGTGCTG GCCTCGCAGG ATCGAATCCG CACCGCGCAG
GAGAATATCG CCAGCGCGCA GCGTATTCTC GACGCCATCA AACAGCGGCT GGCCGCCGGC
ACCGGCAGCG ACCTCGACGT CGCGCAGCAG GAGAGCGTGC TCGCCAACCA GCGCGCCGCC
GTGCCGCTGC TGCGAGTGAC GCTCGCGCAG AACATCAACA CGCTGGCGAC GCTGGTGTCG
CGTCCGCCGG AAGCCGTGAA GATCCTCGGC GGCTCGCTCA ACAGGCTGAG CTCGCCGCTC
GTGACGCCGG GGATGCCGTC CGAGCTGCTG ACCCAGCGAC CGGACATCCG CCGGCAGGAG
GCGCAGCTCG CCGCCGCCAC CGCCAATGTC GGCAGCGCGC GGGCGCAATT CTTCCCGAGC
ATCCAGCTCA CCGGGCAGGG CGGCTATCAG AGCGCGGTGC TGGCGTCGCT GTTCACGCCG
CAGGCGACGT TTTCCAATCT CGCCGCCGGG CTGACGCAGC CGATCTTCGA CGGCGGTCGC
ATCAGCGGCA ATTTCGACCT GACGAAGGCG CAGCAGGATG AGTTGCTGCA GACCTATCGC
AAGACAGTGG TGTCGGCCTT CGCCGACGTC GACAATGCGC TCGAATCGAT CAAGCAGAAC
ACCGAGCGGC TGCGGCTGCA GCGGCAGGTG GTGGCGTCGT CGCGGCGCGC TTTCAGCCTG
GCCGAACAGC AACTACGCGC CGGCACGGCC GACATCGTGA CCGTGCTAAA CACGCAATTG
ACACTATTTC AGGCGGAAGA TTCGCTGATC CAGACGCAGT TGGCGCGCTA TCTGGCGATT
GTCAGTCTGT TTCAGGCGCT CGGGGGCGGC TGGGAGCCGA GGATGGAAAG ACCGGTCAAT
GCTCTTTAA
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| Protein sequence | MSIALRYLRR SVRMVAASAL VVGAGGCILT KDLPDPALDL PPRYKAAALT TTDAPPALDW
WRGFRSPELT QLMEEAQTVN LDIAAATSRI LQADAQARIT GAALLPSLTG NSSGSQNKTS
GSNVSNTTIA GRRFSTYAAS LSASYEIDFW GKNRDAALAA EETATANRFD RDVVALTTMA
SVANAYFQVL ASQDRIRTAQ ENIASAQRIL DAIKQRLAAG TGSDLDVAQQ ESVLANQRAA
VPLLRVTLAQ NINTLATLVS RPPEAVKILG GSLNRLSSPL VTPGMPSELL TQRPDIRRQE
AQLAAATANV GSARAQFFPS IQLTGQGGYQ SAVLASLFTP QATFSNLAAG LTQPIFDGGR
ISGNFDLTKA QQDELLQTYR KTVVSAFADV DNALESIKQN TERLRLQRQV VASSRRAFSL
AEQQLRAGTA DIVTVLNTQL TLFQAEDSLI QTQLARYLAI VSLFQALGGG WEPRMERPVN
AL
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