| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_2512 |
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| Symbol | |
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| ID | 4023003 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | - |
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| Start bp | 2806850 |
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| End bp | 2809909 |
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| Gene Length | 3060 bp |
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| Protein Length | 1019 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637962705 |
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| Product | Outer membrane autotransporter barrel |
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| Protein accession | YP_569643 |
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| Protein GI | 91976984 |
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| COG category | [S] Function unknown |
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| COG ID | [COG4625] Uncharacterized protein with a C-terminal OMP (outer membrane protein) domain |
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| TIGRFAM ID | [TIGR01414] outer membrane autotransporter barrel domain
[TIGR02601] autotransporter-associated beta strand repeat |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.150059 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGGATTT CCGAACTGCG GGTGATAGCT CTGGACGCTG ACAAAGTCAT TCATCGGACC
CTTCGCATCA GTGGCTTTGC CGCCGCTCTC CTTTTCAGCA CGGCGCTCAC AGCGCCAGCA
TTCGCCGGGG GCGGCGCATC GGGACACTAT GCCCACTGGG TCGCAAGGGG TGGCGATGAT
CAGTTGACGG ACCCGGGATC GCCCGGCGAG GATGGCTCAG GATGTTGCGG CGGCGGCGGC
GGCGGCGCTG GAACGACCGG CGGCCAAGGC GGTACAAGCC TATACGATGC GGGGGGAGCA
GGAGGCTCCA CTCCCGGCGC TGACGGTGCT GCCGGTTCCA TGGACTTTTG GGGGTTTGGA
AGCGGTGGCG GCGGTGGTGC CCACGGCTAT GTCGGAGCCA CCCTGCCGAC ATCGGGTGTC
AGAGGTGGTG CCGGCGGCAA GGGAGGCTTG GGTGATACAA GTAAAATAAA TCACGATGCT
ACCGAGGCTG GCGGCGGCGG AGCCGGTGGC TATGGTGCTG TAGTTACGGG ATCCGGCCTC
CTCGGCACGC TGACCACCTC TGTCTATGGC GGCTCCGGTG GTGCCGGAGG CGACGCTCTC
AATGACGCCG CTGCTGGCAG CGGCGGTAGC GGCGGCGTAG GCCTGCGGTT CACGAGCACT
GCAAACAAGC AGCTGATCAT CGGCAACAGC GTCTCCGGCG GCAACGGCGG TGCTACGGGC
GCGAATGGCG GCGTCAATGG TCTCCGCACC GCTGGTCTCG GCGGGGTCGG CCTGGAGGGC
GCGTCGATGG ACGTCACGAT GCTCGCCGGC GGCAGCATCG CCGGCGGCAT GAGCGGCGAT
TCCGTGACGC AGGCGAACGC CATCAACTTC ACGGATGGCC GGAATGCTTT GCGCTTTACC
GGCCCGACGT CGCAATTGTC CGGCAACATC AACCTCGGAT CCAATGCAGC ATTGTGGCTG
TATGGTGTAC CCGGCCTACC GGGCGGTACG GTGATCGACA ATGTCATCAC CGGCGGCGGA
ACGATCACAA AGGACGGGTC AGGCACGATC ACATTCTCTG CCGCCAATAC ATATTCCGGC
GGCACGGTCA TCAACGACGG CACGCTGAAG CTTTCAGGTG CCGGTACGTT GGGAAATGCA
ACCAGTACGA CGACCGTCCA TAGCGGCACG CTGGATCTCG GCGCCACCAC CCAGACGCAA
TCCAGGGTGA ATCTCTACAG CGGCATGCTT CAGAACGGCA ATCTGAATGC GTCCGTGTTT
TCGAACGGCG GCACCATCAA GGATCTCGGC GGCACCGCCA GCCTGACCAC GGAGGACGGC
ACGACGACGC TGCAGGGCAT CAACAGATAT AGCGGCGCCA CCGTTGTGAA TGGCGGCACA
CTCGATGTGC GGGGCACGAT CACGGGGACC TCGTCGGTGG GCGTGTATGA TGGCGCCACG
CTGACGGGAG CCGGCATCAT CGTTGCGCCT TCAGTCACCA TTTACAGCGG CGGCACGTTC
AAGCCCGGTG ATGGCACGGC GGGAAGCTCT ACCACCGTCG AGGGCTCGCT GGCCTTCCAG
TCCGGCGCCT TCTACAGTGT GACGATCGAT CCAGTGACGG CATCCTTTGC CAATGTGGTG
ACCGGATTGA ATTCGCCCGG CATGGTGACG ATCGACAGCG GCGCGACGGT GAATGCCGTG
TTCGCCAATG GCAGCTATAT CAGCAAGACC TACACCATTC TGACCACGAC CGACGGTCGA
TCGGGCACCT TCGACCCGAC GGTGAAGACC ACTAACCTGC CCGCGAATTT CCGCACCACG
CTCGGTTACG ACGCCAACAA CGTGTATCTC AACCTGGCGC TGAACTATAC GCCGGAGCCG
AAGCCGGAGC CGACAAATCC GACGGCTCCG CTCTTTACGC CGCTGAATCA GAACCAGCGC
AATGTCGGCA ACGCCGTGAT CAATGCCTTC AACGCCGGCG GCGCAATCCC GATCGCGTTC
GGCGCGCTGA CGCCGGCCGG TCTTTCGCAG GCGTCAGGCG AGACCAGCGT CGGATCGCAG
CAGACGACTT TCGATGCGAT GAACCTGTTC ATGGGCGCGA TGATCGATCC GTTCGCGGCA
GGCCGAAGCG ATGGCGTCTC GCCGTCGGCG CGCGTCTCAT CCTATGCCGA AGAGCATTCG
CCGCGCAACG CCTACGCGAT GTTCACCAAG GCGATGCCGG TGAAAGCCGA TCCGTTCGCA
CAGCGCTGGA ACGTGTGGGC GACCGGCTTC GGCGGTTCGC AGACCACGGA CGGCAATACT
GCGACGGGAT CGAACACCTC CACCAGCCGC ATCTATGGCG CGGCGGTCGG CGCTGATTAT
CGCATCTCAC CGAACACGCT GGCGGGCTTC GCCATGTCCG GCGGCGGCAC CACCTTCTCG
GTCGCCAACA GCGGCAACGG CCGGTCGGAT CTGTTCCAGG TCGGTGGCTT CGTGCGCCAC
ACCATCGGGA CCAGCTATCT GACCGCCGCG CTGAGCTATG CGTGGCAGGA TGTGACGACG
GACCGCAACG TCGCTGGCAT CGACCAGTTG CAGGCCCGCT TCAACGTCAA TGCGTTCTCC
GGCCGCTTCG AAGGCGGCAC CCGCTATGTC ACGCCATGGA TGGAGATCGG CGCGACGCCT
TACGCCGCGG TGCAGGCCAC CGCGTTCGAC CTGCCGGGCT ATCGCGAGCA GGTCTTGTCC
GGTCCCGGCA TCTTCGCGCT GAACTACGAC GCCAAGGGTA TCACTTCGAC ACGCAGCGAG
CTTGGTGTCC GCACCGACAA GGCCTATGCG CTGACGGATT CCATCCTGAC CCTGCGCGGT
CGCTTCGCCT GGGCGCATGA GTTCAATCCC GACCGCAGCG TCGCCGCCAC GTTCCAGTCG
GTGCCCGGCG CGTCGTTCGT CGTCAACGGC GCACGGCAGG CCAGCGACGC CGCATTGACC
ACGGCCTCCG CCGAGGTGAA GTGGCGCAGC GGCTTCTCGC TCGCGGCGAT CTTCGAAGGC
GAGTTCTCCG ACGTCACCCG CAGCTATGCG GGCAAGGGCG TCGCGCGCTA TCAGTGGTAA
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| Protein sequence | MGISELRVIA LDADKVIHRT LRISGFAAAL LFSTALTAPA FAGGGASGHY AHWVARGGDD
QLTDPGSPGE DGSGCCGGGG GGAGTTGGQG GTSLYDAGGA GGSTPGADGA AGSMDFWGFG
SGGGGGAHGY VGATLPTSGV RGGAGGKGGL GDTSKINHDA TEAGGGGAGG YGAVVTGSGL
LGTLTTSVYG GSGGAGGDAL NDAAAGSGGS GGVGLRFTST ANKQLIIGNS VSGGNGGATG
ANGGVNGLRT AGLGGVGLEG ASMDVTMLAG GSIAGGMSGD SVTQANAINF TDGRNALRFT
GPTSQLSGNI NLGSNAALWL YGVPGLPGGT VIDNVITGGG TITKDGSGTI TFSAANTYSG
GTVINDGTLK LSGAGTLGNA TSTTTVHSGT LDLGATTQTQ SRVNLYSGML QNGNLNASVF
SNGGTIKDLG GTASLTTEDG TTTLQGINRY SGATVVNGGT LDVRGTITGT SSVGVYDGAT
LTGAGIIVAP SVTIYSGGTF KPGDGTAGSS TTVEGSLAFQ SGAFYSVTID PVTASFANVV
TGLNSPGMVT IDSGATVNAV FANGSYISKT YTILTTTDGR SGTFDPTVKT TNLPANFRTT
LGYDANNVYL NLALNYTPEP KPEPTNPTAP LFTPLNQNQR NVGNAVINAF NAGGAIPIAF
GALTPAGLSQ ASGETSVGSQ QTTFDAMNLF MGAMIDPFAA GRSDGVSPSA RVSSYAEEHS
PRNAYAMFTK AMPVKADPFA QRWNVWATGF GGSQTTDGNT ATGSNTSTSR IYGAAVGADY
RISPNTLAGF AMSGGGTTFS VANSGNGRSD LFQVGGFVRH TIGTSYLTAA LSYAWQDVTT
DRNVAGIDQL QARFNVNAFS GRFEGGTRYV TPWMEIGATP YAAVQATAFD LPGYREQVLS
GPGIFALNYD AKGITSTRSE LGVRTDKAYA LTDSILTLRG RFAWAHEFNP DRSVAATFQS
VPGASFVVNG ARQASDAALT TASAEVKWRS GFSLAAIFEG EFSDVTRSYA GKGVARYQW
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