Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPD_2442 |
Symbol | |
ID | 4022933 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB5 |
Kingdom | Bacteria |
Replicon accession | NC_007958 |
Strand | - |
Start bp | 2720723 |
End bp | 2723854 |
Gene Length | 3132 bp |
Protein Length | 1043 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 637962635 |
Product | ribonuclease |
Protein accession | YP_569573 |
Protein GI | 91976914 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1530] Ribonucleases G and E |
TIGRFAM ID | [TIGR00757] ribonuclease, Rne/Rng family |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.26344 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCCAACA AGATGCTGAT CGACGCCACC CACCCGGAAG AGACCCGGGT GGTCGTGGTC CGCGGCAACC GCGTCGAAGA GTTTGATTTC GAGACTGCCC AGCGCAAACA ACTGCGCGGC AACATCTACC TCGCCAAAGT CACCCGGGTC GAGCCGTCGC TGCAGGCCGC CTTCATCGAG TACGGCGGCA ATCGTCACGG CTTCCTCGCC TTCAGCGAAA TCCATCCCGA TTACTATCAG ATCCCGGTTG CAGACCGTCA GGCTCTGATC GAGGCGGACG AGCGCGCCCA TCGCGAGGCC GAGGAAGAGA GCGAGCAGCG CTCCACCCGA CGCCGTTCAA GGCATCGCAG CCACCGCCGC CGCGGCAATG GCGAGCGGGT GCAGAGCGAG ATCGTCGACG CGTCGGCCGA TCAGCCGCAC GTCGATTCCG CTGACCATCA CCACGACGGA CAAGCGCATC CCGACCACGA ACGGCCGATG CACGAGCTGG TGGAGCACGA GTCCAGCTAC GCGCCTCAGG CCTCGTCGTC CGACGCAGAG GGCGATCACG CCCACGGCGG TCCCGACCAC CAGGAAAACC ATGCCGACGC GGGCGATCAC GGGCACGATG AGCCGGCGGC TGCGCCGAGC ATCGTCGCCG AGGCCGCGCC CGACGCTCCG CCGCTGACCT CCTCCGCTCC GATCGCGCCG GAAACCGATT CCGATGAGCG CGGCTCCGAA GATCAGGGCG GCTACGCCGA GGATGCGCCG TTCCCGATCG CGGAGACCGT CAGCGCCGAG CATCACGACG ACGAGCACGA CCATGACGCC GGTGACGATC TGATCGACAG CGACGCCGAC TCCGAAGGCG ACGACGAAGC GGACGACGAG GACGACGACG AGGCCGAAGA AGACATCGTC GAATCCGTTG GTGGCGACGA CGTGCTGGAA GAAGTTCCGG AGCGCGCTTT CCGGCCCCGC CGCCAGTACA AAATTCAGGA AGTCATCAAG CGCCGCCAGG TGATGCTGGT GCAGGTGGTC AAGGAAGAGC GCGGCAACAA GGGCGCGGCG CTGACCACCT ATCTGTCGCT GGCCGGACGC TACGCCGTGC TGATGCCGAA CACCGCGCGC GGCGGCGGCA TCAGCCGCAA GATCACCTCG GCGCAGGATC GCTCGCGCCT GAAGGAAGTG GTGCAGGACC TCGACGTGCC GGAAGGCATG GGCATCATCC TGCGCACCGC CGGCGCCGCG CGCACCAAGC CGGAGATCAA GCGCGACTTC GAATATCTGA TCCGGATGTG GGAGACGGTC CGCGACGTCA CCCTGAAATC GCAGGCGCCG ACGCTGGTCT ACGAGGAAGG CTCGTTGATC AAGCGCTCGC TGCGCGACCT CTACAACAAG GAAATCGACG AAATCCAGGT GGCGGGCGAG CCCGGCTATC AGGAAGCGCG CGACTTCATG CACATGCTGA TGCCCTCCAA CGTCCGCGCG GTGAAGCTGT ATCGCGACGG CCAGCCGCTG TTCTCGCGGA TGGGGGTGGA GAGTCAGCTC GACGCGATGT TCTCGCCGAC CGTGCAACTG CGCTCCGGCG GCTACATTGT CCTCAACCAG ACCGAAGCGC TGGTCTCGAT CGACGTCAAT TCCGGCCGCT CGACCCGCGA GCACCATATC GAGGATACCG CGCTCAAGAC CAACATGGAG GCCGCCGAAG AAGTCGCGCG GCAGCTCCGG TTGCGTGACC TCGCCGGCCT GATCGTCATC GACTTCATCG ACATGGACGA GAAGCGCAAC AACCGCGCAG TCGAGCGCAA GCTCAGCGAC TGCCTGCGGC AGGATCGCGC CCGCATCCAG GTCGGACGCA TCTCGCATTT CGGCCTGCTC GAAATGTCGC GCCAGCGGAT TCGCGCAAGC GTGCTCGAGA GTTCAACCGA GCCCTGCGCG CATTGCGGCG GAAGCGGCCA CGTTCGCTCA GTCTCCTCGG TGGCGCTGCA ATTGCTGCGC GGCCTTGAAG AGATCCTGAT GAAGGGCGCG ACCCACAATC TGATCGTGCG CACCCGCAAC GACGTCGCGC TCTACGTCCT CAACCAGAAG CGCGGCCACC TTCGCGACCT CGAGACCGGC TTCAAGGTGA CGCTGTCGGT GATGGCTGAC CCCACTGTGA CCGGACAGCA GTCGTTCGTG ATCGATCGCG GCGAGCAGGT CCACACGCTG GAAGCCGCCA AGGCGCTGCT CGCGGCGCAG GTTGCGGCTG CTCCGGCGCA GCCTGAAGAA TTGCCGTATG AGGACGACGA GAGCTACGAG TTCGAAGCCG AGATCGAGAC CGACGAAACC GTCGGCCTGA CCGGCGAGTC GGCCGGCGAC AGCATCGAAG CCGAAGGCGA AGGCGACGCC CGCAAGCGCA AGCGCCGCCG CCGCCGCCGG CCGCGCACCG GCGAGGCCCG TGACGCGGGC GCGCCGCGCG AGGATGGCGA AGCTGCGCTC GTTGCCGAGG GCGCGGAAGC CGCTGCCGAG GACGATAGCG AAGACGGCGA AGACAGCGCC GAGGGCGAAG GCGAAGCACG CGCCGATCAG GCCGGCGAAC GTCGTCCGCG TCGCCGTGGC CGCCGCGGCG GTCGCCGCCG GCGCGGCGCT GCGGAAGGCG GCCTCGAGGA CGGCGCATCC GGCTCGATTT CCGACGAACT CGGCGAGTTG GAGACCTCGG AGGCTGCCGA CGCCGTCGCC GATATGGACG GCGCATCGTC AGGCGAGCAG TTGCTGGGCA AGCGGCACGA GCCTGATGCA GACGATGATG ATCATGCGGT TGCCGAGCCC GTCGCAGCTG CGCCTGCGCC CGTCGCCGTG AGCGAACCGG AAAAGGCCGA GCCTGCGGCT CCGCAGAGTG CGGCTCCGCA GAGCGAGCCG GTTTCGTCCG CTCAGGCCCA GGACGATGCT GCGGCCGAAA GGGCCGCACG TCGCCGCTCC ACCGTCCGCG AGAAGGTGAA TTTCGGTTCG ACCGAGCCGA AGCCGGAAGT CTCGATGCCG CCGGCGGCCG AACCGGCCCC GCAGCCCGAG CCCGCAGCCC CTGCCCCGGC GCCACAGGCG GCGGACGAGT CCACGCCGGA AGCGCCGCGC CGCGCCGGCT GGTGGTCCCG CCGCTTCGGT GGCGGAAGCT AA
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Protein sequence | MPNKMLIDAT HPEETRVVVV RGNRVEEFDF ETAQRKQLRG NIYLAKVTRV EPSLQAAFIE YGGNRHGFLA FSEIHPDYYQ IPVADRQALI EADERAHREA EEESEQRSTR RRSRHRSHRR RGNGERVQSE IVDASADQPH VDSADHHHDG QAHPDHERPM HELVEHESSY APQASSSDAE GDHAHGGPDH QENHADAGDH GHDEPAAAPS IVAEAAPDAP PLTSSAPIAP ETDSDERGSE DQGGYAEDAP FPIAETVSAE HHDDEHDHDA GDDLIDSDAD SEGDDEADDE DDDEAEEDIV ESVGGDDVLE EVPERAFRPR RQYKIQEVIK RRQVMLVQVV KEERGNKGAA LTTYLSLAGR YAVLMPNTAR GGGISRKITS AQDRSRLKEV VQDLDVPEGM GIILRTAGAA RTKPEIKRDF EYLIRMWETV RDVTLKSQAP TLVYEEGSLI KRSLRDLYNK EIDEIQVAGE PGYQEARDFM HMLMPSNVRA VKLYRDGQPL FSRMGVESQL DAMFSPTVQL RSGGYIVLNQ TEALVSIDVN SGRSTREHHI EDTALKTNME AAEEVARQLR LRDLAGLIVI DFIDMDEKRN NRAVERKLSD CLRQDRARIQ VGRISHFGLL EMSRQRIRAS VLESSTEPCA HCGGSGHVRS VSSVALQLLR GLEEILMKGA THNLIVRTRN DVALYVLNQK RGHLRDLETG FKVTLSVMAD PTVTGQQSFV IDRGEQVHTL EAAKALLAAQ VAAAPAQPEE LPYEDDESYE FEAEIETDET VGLTGESAGD SIEAEGEGDA RKRKRRRRRR PRTGEARDAG APREDGEAAL VAEGAEAAAE DDSEDGEDSA EGEGEARADQ AGERRPRRRG RRGGRRRRGA AEGGLEDGAS GSISDELGEL ETSEAADAVA DMDGASSGEQ LLGKRHEPDA DDDDHAVAEP VAAAPAPVAV SEPEKAEPAA PQSAAPQSEP VSSAQAQDDA AAERAARRRS TVREKVNFGS TEPKPEVSMP PAAEPAPQPE PAAPAPAPQA ADESTPEAPR RAGWWSRRFG GGS
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