| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_2412 |
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| Symbol | |
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| ID | 4022902 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | - |
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| Start bp | 2686829 |
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| End bp | 2687251 |
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| Gene Length | 423 bp |
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| Protein Length | 140 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637962604 |
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| Product | nickel responsive regulator |
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| Protein accession | YP_569543 |
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| Protein GI | 91976884 |
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| COG category | [K] Transcription |
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| COG ID | [COG0864] Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain and a metal-binding domain |
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| TIGRFAM ID | [TIGR02793] nickel-responsive transcriptional regulator NikR |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.0049093 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.0222031 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCACCGCG TGACGATCAC TTTGGACGAC GACCTGATGG AGAGACTCGA CGCCATCATC
GCGGTGCGTG GCTACCAGAA TCGTTCCGAG GCCATCCGGG ATCTGGCGCG GATTGGGATC
CAGCAGACGT CCGCGCACGA CAGCGGCGAA CGTTGCGTCG GTGCGATGGT CTACACCTAC
GATCATTCCA AGCGCGATTT GCCGCGCAAG CTGACGCAGA GCTTCCACAA TCATCACGAC
CTGTCGCGCG CGACCATGCA TGTGCATCTC GACCACGATC AGTGTCTCGA GGTCACAATC
CTCGACGGCA AGGCTAGCGA GCTGCAGCAC TTTGCCGATC ATATCTTTTC CGAACGCGGC
GTGCGCTATG GCCGGCTGGT GACCATCCCC ACCATGGATG ACGAGCAGCA CACCCACGAC
TGA
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| Protein sequence | MHRVTITLDD DLMERLDAII AVRGYQNRSE AIRDLARIGI QQTSAHDSGE RCVGAMVYTY
DHSKRDLPRK LTQSFHNHHD LSRATMHVHL DHDQCLEVTI LDGKASELQH FADHIFSERG
VRYGRLVTIP TMDDEQHTHD
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