Gene RPD_2402 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPD_2402 
Symbol 
ID4022891 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB5 
KingdomBacteria 
Replicon accessionNC_007958 
Strand
Start bp2674682 
End bp2676970 
Gene Length2289 bp 
Protein Length762 aa 
Translation table11 
GC content63% 
IMG OID637962593 
ProductATP-binding region, ATPase-like 
Protein accessionYP_569533 
Protein GI91976874 
COG category[T] Signal transduction mechanisms 
COG ID[COG4251] Bacteriophytochrome (light-regulated signal transduction histidine kinase) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0299776 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCATGCGG CTGCTGGTGA CGTCGATCTG ACGAACTGCG ACCGGGAGCC GATCCACATT 
CCGGGCTGCA TCCAGCCTCA CGGATTGCTG ATCGCGTTCA ACGACGAATT GAAGGTTGTC
GCCGTCAGTT CGAACATTGG AAACTTCGTC GACCTCGAAC CAGGCGAGCT GCTGGGCCAA
TCGCTCGACA AGGCGCTCGA CTCCGACAGC CATATGCGCT TGCGCAAAGC GATGCGAGAG
CCCGTCGATG CGAGCGGATC ACCGATCGCA ATCCGCCTGC ATGGTCACGA CGCAGAATTC
ACCGGCCTTT GGCACCGCCA CGGGGGACTA GCTTTCCTGG AACTCGAAGT CCCGCTGCAC
GAGGCGGCCG AGTCGCACGC GTTCTTCTGC CGGACCAGCG GCGCGATCAA GCGACTGCAG
GCGGCGCAGA CCCTGCAGGG CGCCTGCGCC GCGGCGGCCT GCGAAGTGCG GGAGATCACC
GAATTCGATC GCGTCAAAAT TTATCGCTTC GCTTCCGACT ACAGCGGCGA GGTCATCGCA
GAGGACCGCG CCGAAGGGGT CGAGTCGTTC CTCGGTCTGC GTTTTCCGCC GTCGGATATT
CCAGTGCAGG CGCGCCGGCT CTACACGATC AATCCGATCC GCATCATTCC CGATATCGAC
TACATCCCGG TGCCGATCGT GCCCGGCACC GATCCGTCGA CCGGGCAGGC CATCGATCTG
ACGTTTTCGG TGCTGCGCAG CGTGTCGCCG GTTCATCTCG AATACATGCG CAATATTGGA
ATGCGGGGCA CGATGTCGGT CTCGATCCTC CGCGGCGACA GGCTGTGGGG ACTGATCGCC
TGTCACAACC GGCAGCCGAG ATATGTCGGG CACGACGCCC GGCAGGCCTG TGAGATGGTG
GCGCAGGTGC TGGCCTGGCA GGTCGGCGTG ATGGAGGAGC AGGCGGCGAC CCGCCAAACC
TTGAAGGGCA AGGCGATCCA ACGCAGCCTG ATCAGCGACA TCGAGCAATT GCACGACCAT
CGTGCCGGCC TGATCCGGAA TAGCGAGGCA CTGCTCGACA TGATGGGCGC GTCGGGCCTG
TGTCTGTTCG GGCGCGAAGG CATCACCGCG ATCGGCAGCA CCCCGCCTGA ATCGGCGATC
GAGAAGGTTG CCAGCCTGGT CGGGCGCAAC GACAGCACCG AGTTGTTCGA AACCGATCAA
CTGTCGACCC TGTTTCCGGA GGCCAAAGCT TTCGCCGACG TCGCGAGCGG GGTGCTGGCG
GTGCCGCTGT CGCGGACGAC GCCGCGTCGC GTGATGTTGT GGTTTCGGCC AGAAGTCGCG
CAGACGGTGC ATTGGGCCGG CAACCCCGAC AAATCGGTCA CAACCGAGGC TGGCCGGCTG
CGGCCACGCA CGTCGTTCGC CGCGTGGACC GAGGAAACCA GTGGCCGCGC ACTCCCTTGG
CAGCCGCACG AGATCGCCGC GGCCGTTGAA ATAAGGGACC TCGTCATCGA CGTCATCCTG
CGCAACACCG AGAAGCTCGA ACGCGTGAAT ACCAAGCTCG CGCGCAGTAA TGAGGAACTC
GAGGCCTTCG CCAATGTCGC CTCGCACGAC ATCAAGGAGC CGTTGCGCCA TATCGAAGCC
TTCGCCGGCC TGCTCGGCGA GTCGATCCGC GAGATGGGCG ACGAACGACT CGGCCTGATG
GTCAGCGGAA TCGAGAAATC ATCTCAGCGG CTGCGAATTC TGATCAACGA TCTCGCCGAA
TTCTCACAGC TCGGGCGCCG CTCCAAACCG CTCACGCAAA CCTCGCTTCT GGAAGTCGCG
CAGGAAGTCG TGACCGATCT TCATCAGCGG ATCGACGAGG CGTCAGCGAT CGTCGAGATC
GGTGATCTGC CAGTCGCGCG TTGCGATCGC AACCAGATGC GCCAGGTGCT GCAGAACCTT
GTGTCGAACG CCTTGAAGTA CCGACGACCC GGTCGCCCTT GCCGAATCCG CGTGTTCGCA
GAATCGCGGA CCGAGCCGAG GCCGCGAGGG GAGGTGGGGG ATTCAACGAT CAGTACCCGA
GTCTGTGTCA GCGACAACGG CATCGGCTTC GATCCCAAAT ATGCCGAGCA GATCTTCGAA
CCGTTTCAGC GGCTGCACGG CCCCGACGAA TATGAAGGCA GCGGCATCGG GCTCGCGATC
TGCCGCAAGA TCGTGCAGCG GCACGGTGGC CGGGTGGGCG TCGACACCAT TCCGGGCTCG
GGGTCGACGT TCTGGTTCAC CCTGCCGATC GCGGCCGATC CATCCGCCGA ACCGAACAGG
GGATCGTGA
 
Protein sequence
MHAAAGDVDL TNCDREPIHI PGCIQPHGLL IAFNDELKVV AVSSNIGNFV DLEPGELLGQ 
SLDKALDSDS HMRLRKAMRE PVDASGSPIA IRLHGHDAEF TGLWHRHGGL AFLELEVPLH
EAAESHAFFC RTSGAIKRLQ AAQTLQGACA AAACEVREIT EFDRVKIYRF ASDYSGEVIA
EDRAEGVESF LGLRFPPSDI PVQARRLYTI NPIRIIPDID YIPVPIVPGT DPSTGQAIDL
TFSVLRSVSP VHLEYMRNIG MRGTMSVSIL RGDRLWGLIA CHNRQPRYVG HDARQACEMV
AQVLAWQVGV MEEQAATRQT LKGKAIQRSL ISDIEQLHDH RAGLIRNSEA LLDMMGASGL
CLFGREGITA IGSTPPESAI EKVASLVGRN DSTELFETDQ LSTLFPEAKA FADVASGVLA
VPLSRTTPRR VMLWFRPEVA QTVHWAGNPD KSVTTEAGRL RPRTSFAAWT EETSGRALPW
QPHEIAAAVE IRDLVIDVIL RNTEKLERVN TKLARSNEEL EAFANVASHD IKEPLRHIEA
FAGLLGESIR EMGDERLGLM VSGIEKSSQR LRILINDLAE FSQLGRRSKP LTQTSLLEVA
QEVVTDLHQR IDEASAIVEI GDLPVARCDR NQMRQVLQNL VSNALKYRRP GRPCRIRVFA
ESRTEPRPRG EVGDSTISTR VCVSDNGIGF DPKYAEQIFE PFQRLHGPDE YEGSGIGLAI
CRKIVQRHGG RVGVDTIPGS GSTFWFTLPI AADPSAEPNR GS