| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_2021 |
|---|
| Symbol | |
|---|
| ID | 4022503 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | - |
|---|
| Start bp | 2266957 |
|---|
| End bp | 2267952 |
|---|
| Gene Length | 996 bp |
|---|
| Protein Length | 331 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637962214 |
|---|
| Product | 2-nitropropane dioxygenase, NPD |
|---|
| Protein accession | YP_569157 |
|---|
| Protein GI | 91976498 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2070] Dioxygenases related to 2-nitropropane dioxygenase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.01256 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.586253 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCAAGA CGCGTTTTAC CGAAACATTC GGCATCCAGC ATCCGATCGT CCAGGGCGGG
ATGCAGTGGG TCGGCCGCGC CGAACTCGTG GCCGCTATCG CCAATGCCGG CGCGCTCGGC
ATGATCACCG CGCTGACGCA GCCGACGCCG GAGGATCTCA CCAAGGAGAT CGCGCGCTGC
CGTGACCTCA CCGACAAGCC GTTCGGCGTC AACCTCACGA TCCTGCCGGC GATCAAGCCG
CCGCCTTATG CGGAGTATCG TCAGGCGATC ATCGAGAGCG GCGTCAGGAT CGTCGAGACC
GCGGGCAACA AGCCGCAGGA GCACGTCGAG GAATTCAGAA AGCACGGCGT CAAGGTTCTG
CACAAATGTA CCAGCGTCCG CCACGCGCTG TCGGCGGAGC GGATGGGCGT CGACGGCATT
TCGATCGACG GTTTCGAATG CGCCGGCCAC CCGGGCGAAG ACGATACGCC CGGCCTGATC
CTGATCCCCG CCGCCGCCGA CAAGATCAAG GTCCCGATGA TCGCCTCGGG CGGCTTCGCC
GATGGGCGCG GCCTGGTCGC GGCGCTGGCG CTCGGCGCCG ACGGCATCAA CATGGGCACG
CGATTCATGT GCACCAAAGA GAGCCCGATC CATCAGGCGG TGAAGGAAAA GATCGTCGCC
AATGACGAGC GCTCGACCGA CCTGATCTTC CGCACCATGC GCAACACCTC GCGCGTCGCG
AAGAACGCGA TCAGCCAGCA GGTGATCGAG CTAGAGAAGC AGGGCGCGAC CTTCGAGCAG
GTCCGCGAAC TGGTCGCCGG CGCCCGCGGC AAGATGGTCT ACGCTACCGG CGACACCGAT
GAAGGCGTGT GGTCGGCCGG TCAGGTCCAG GGACTGATTC ATGACATTCC GAGCTGCGCC
GAGCTGGTGT CGCGGATCAT GCGCGACGCC GAGGCGATCA TTCGTGCGCG GCTCGAAGCG
ATGCTGTCGG GCGGCCAGCG CGAAGCCGCC GAATGA
|
|---|
| Protein sequence | MIKTRFTETF GIQHPIVQGG MQWVGRAELV AAIANAGALG MITALTQPTP EDLTKEIARC
RDLTDKPFGV NLTILPAIKP PPYAEYRQAI IESGVRIVET AGNKPQEHVE EFRKHGVKVL
HKCTSVRHAL SAERMGVDGI SIDGFECAGH PGEDDTPGLI LIPAAADKIK VPMIASGGFA
DGRGLVAALA LGADGINMGT RFMCTKESPI HQAVKEKIVA NDERSTDLIF RTMRNTSRVA
KNAISQQVIE LEKQGATFEQ VRELVAGARG KMVYATGDTD EGVWSAGQVQ GLIHDIPSCA
ELVSRIMRDA EAIIRARLEA MLSGGQREAA E
|
|---|
| |