| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_1970 |
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| Symbol | |
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| ID | 4022452 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | + |
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| Start bp | 2207879 |
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| End bp | 2209174 |
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| Gene Length | 1296 bp |
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| Protein Length | 431 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 637962163 |
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| Product | phage major capsid protein, HK97 |
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| Protein accession | YP_569106 |
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| Protein GI | 91976447 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4653] Predicted phage phi-C31 gp36 major capsid-like protein |
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| TIGRFAM ID | [TIGR01554] phage major capsid protein, HK97 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.141118 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.540615 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATCCGT TCTTCATCAT CACCACAAGG GATCACATGA TGACCACCAC CTTCGACCAC
GCTCCCGAGA CCAAGGCCGG AATCGCCGGC GACGATGCGC AGCAGGTGTA CGACGCGCTG
ATGCGGACGT TCGAGGACTA CAAGGCGGAG AACGATTCCC GGCTGCAGGC GATCGAGAAG
CGCGGCGGCG ATGTCATCGC CGAGGACAAG GTGGCGCGGA TCGACGCCGC GCTCAATGCG
CAGCAGCGCC GGCTCGACGA ACTGGCGCTG AAGCAGGCGC GGCCGCAGCT CGGCGCCGAC
AGCGCCCTGC GCCCCCGCGG CGCGGCCGAG CACAAGAGCG CGTTCGACGC CTATATCCGC
AACGGCGACG CCGCGACGCT GCGGCAGATC GAGACCAAGG CGCTGTCGGT CGGCTCCAAT
CCGGACGGCG GCTATCTGGT GCCGGAAGAG TTGGAGCGCA GCATCGCGGC GCGGCTCAGC
GCGATCTCAC CGATCCGCGG CCTGGCTTCG GTGCGGCAGA TCTCCGGCAG CGTCTACAAG
AAGCCGTTCA TGACCGCGGG TCCTGCGACC GGCTGGGTCG GCGAGGCCGC GGCGCGGCCG
CAGACCAGTT CGCCGACGCT GGACGCGCTG TCGTTCCCGG CGATGGAGCT GTATGCGATG
CCGGCCGCGA CCGCGACGCT GCTCGACGAT GCCGCGGTCA ATCTCGACGA CTGGCTCACC
GGCGAGATCG ACACCGTGTT CGCCGAGCAG GAGGGCGCCG CCTTCGTCTC CGGCGACGGG
ATCAACAAAC CGAAAGGCTT TCTCGCCGCG CCGACGGTGG CGAACGCCGC CTGGAGCTGG
GGCAATCTCG GTTTCGTCGC CACCGGCGCC GCCGGCGCAT TCCCCGCCAG CAATCCGTCC
GACGTGCTGA TCGACCTGAT GTTCGCGCTG AAGCCGGGCT ACCGGCAGAA CGCCAGCTTC
GTGATGAACC GGCGGACGCA AGCCGCGATC CGCAAGTTCA AGGACAATAA CGGCGTCTAT
CTGTGGCAGC CGCCGGCCAC CGCCTCGGGC CGCGCCAGCC TGATCGGCTT CCCGCTGGCC
GACGCCGAGG ACATGCCGGA CATCGCCGCC AATTCGCTCG CCATCGCCTT CGGCGATTTC
CGCCGCGGCT ATTTGATCGT CGACCGCCAG GGCGTCCGCG TCCTGCGCGA CCCGTATTCC
GCCAAGCCCT ACGTGCTGTT CTACACCACC AAGCGGGTCG GCGGCGGGGT GCAGGATTTT
GATGCGATCA AGCTGTTGAA GTTTGGGGGG AGTTGA
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| Protein sequence | MNPFFIITTR DHMMTTTFDH APETKAGIAG DDAQQVYDAL MRTFEDYKAE NDSRLQAIEK
RGGDVIAEDK VARIDAALNA QQRRLDELAL KQARPQLGAD SALRPRGAAE HKSAFDAYIR
NGDAATLRQI ETKALSVGSN PDGGYLVPEE LERSIAARLS AISPIRGLAS VRQISGSVYK
KPFMTAGPAT GWVGEAAARP QTSSPTLDAL SFPAMELYAM PAATATLLDD AAVNLDDWLT
GEIDTVFAEQ EGAAFVSGDG INKPKGFLAA PTVANAAWSW GNLGFVATGA AGAFPASNPS
DVLIDLMFAL KPGYRQNASF VMNRRTQAAI RKFKDNNGVY LWQPPATASG RASLIGFPLA
DAEDMPDIAA NSLAIAFGDF RRGYLIVDRQ GVRVLRDPYS AKPYVLFYTT KRVGGGVQDF
DAIKLLKFGG S
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